Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi587g00010 ATGGAAAAGGACTTGAAGGATAAGGTCAAAGAAGGGGAAACAAAGCAAGTCAAATACAGAGGAGTACGGTGCAGGCCTTGGGGAAAATTTGCTGCAGAGATTCGGGATTCAGCTAGGCATGGAGCTCGAGTGTGGCTTGGGACTTTTAACACTGCAGAGGAGGCTGCAAGAGCTTATGATCGTGCTGCTTTTCAAATGAGAGGATCAAACATTCTCTCAAATAAATTATTTCTCACCAATTATTTCTTTACTACCTAA 258 0.4264 MEKDLKDKVKEGETKQVKYRGVRCRPWGKFAAEIRDSARHGARVWLGTFNTAEEAARAYDRAAFQMRGSNILSNKLFLTNYFFTT 85
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi587g00010 85 SMART rav1_2 18 82 IPR001471 GO:0003700|GO:0006355
Sebi587g00010 85 SUPERFAMILY DNA-binding domain 18 74 IPR016177 GO:0003677
Sebi587g00010 85 Pfam AP2 domain 18 68 IPR001471 GO:0003700|GO:0006355
Sebi587g00010 85 FunFam Ethylene-responsive transcription factor 2 17 76 - -
Sebi587g00010 85 PRINTS Ethylene responsive element binding protein signature 19 30 IPR001471 GO:0003700|GO:0006355
Sebi587g00010 85 PRINTS Ethylene responsive element binding protein signature 42 58 IPR001471 GO:0003700|GO:0006355
Sebi587g00010 85 ProSiteProfiles AP2/ERF domain profile. 18 82 IPR001471 GO:0003700|GO:0006355
Sebi587g00010 85 Gene3D AP2/ERF domain 17 81 IPR036955 GO:0003700|GO:0006355
Sebi587g00010 85 CDD AP2 18 74 IPR001471 GO:0003700|GO:0006355
Sebi587g00010 85 PANTHER DNA-BINDING DOMAIN 12 74 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi587g00010 Sebi-Chr587 533204 533461 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi587g00010 13 82 AP2-EREBP Transcription Factor Family AT3G23230 65.714 6.63e-28 96.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Sebi587g00010 AP2 6.1e-16 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi587g00010 - - gmx:100800069 118.627