Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi587g00007 ATGGCTTCTAGTCCCCGCACCGTTGAAGAGATCTTCAAGGACTACAGCGCTAGAAGAACCGCCGTTGTTCGTGCTCTCACTCAAGATGTTGATGAATTTTACGGGCTCTGTGATCCAGATAAGGAGAACTTGTGTCTCTATGGACATCCAAATGAAAACTGGGAAGTGACTCTGCCAGCAGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCTAGAGATGGCATGAACCGCAGGGACTGGCTTTCTCTGGTTGCTGTGCACAGTGATTCGTGGTTGCTTTCTGTGGCCTTTTATCTTGGAGCTCGTCTTAACCGCAATGAAAGGAAACGTTTGTTTAGTTTGATCAATGATCTTCCCACCGTTTTTGAAGTTGTGACTGACAGGAAGCCAATCAAGGACAAGCCCACTGCAGATAGTGGAAGCAAATCCAGGGGAAGCACCAAGAGATCTAGTGATGGACAAGTGAAAAGCAACCCAAAGTTTGCAGATGAGGGATATGAGGAGGAAGAAGATGAGCATAGTGAAACACTCTGCGGGAGCTGTGGTGGAAATTACAACGCCGACGAGTTTTGGATTGGCTGCGATATATGTGAGAAGTGGTTCCATGGGAAATGTGTGAAGATTACCCCTGCAAAGGCTGAGAGCATAAAGCAATACAAGTGCCCATCTTGCAGCATGAGGAGGGGCAGGCCTTAA 714 0.479 MASSPRTVEEIFKDYSARRTAVVRALTQDVDEFYGLCDPDKENLCLYGHPNENWEVTLPAEEVPPELPEPALGINFARDGMNRRDWLSLVAVHSDSWLLSVAFYLGARLNRNERKRLFSLINDLPTVFEVVTDRKPIKDKPTADSGSKSRGSTKRSSDGQVKSNPKFADEGYEEEEDEHSETLCGSCGGNYNADEFWIGCDICEKWFHGKCVKITPAKAESIKQYKCPSCSMRRGRP 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi587g00007 237 ProSitePatterns Zinc finger PHD-type signature. 184 230 IPR019786 -
Sebi587g00007 237 FunFam PHD finger alfin-like protein 176 232 - -
Sebi587g00007 237 CDD PHD_AL_plant 183 233 IPR044104 -
Sebi587g00007 237 SMART PHD_3 183 231 IPR001965 -
Sebi587g00007 237 SUPERFAMILY FYVE/PHD zinc finger 172 235 IPR011011 -
Sebi587g00007 237 PANTHER CPG BINDING PROTEIN 4 236 IPR045104 GO:0006355|GO:0042393
Sebi587g00007 237 ProSiteProfiles Zinc finger PHD-type profile. 181 233 IPR019787 -
Sebi587g00007 237 MobiDBLite consensus disorder prediction 137 173 - -
Sebi587g00007 237 Pfam PHD-finger 184 231 IPR019787 -
Sebi587g00007 237 MobiDBLite consensus disorder prediction 146 163 - -
Sebi587g00007 237 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Sebi587g00007 237 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 173 231 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi587g00007 Sebi-Chr587 292873 297259 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi587g00007 2 236 Alfin-like Transcription Factor Family AT5G05610 77.119 3.76e-121 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Sebi587g00007 Alfin 5.5e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi587g00007 K26274 - gmx:100793126 462.225