Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Sebi587g00004 | ATGGGCGTGGACTACTACAAGGTTCTTCAGGTAGATAGAGGTGCCAGTGATGATGATCTCAAGAAAGCATATCGAAAACTTGCCATGAAGTGGCATCCTGATAAGAACCCTAACAACAAGAAAGAGTCTGAAGCTAAATTCAAACAAATCTCTGAAGCCTATGATGTTTTGAGTGATCCACAGAAGCGAGCAGTGTATGATCAGTATGGTGAGGAGGGGTTGAAGGGGCAGGTGCCGCCACCGGGTGCCGGTGGATTTCCCGGTGACGGCGGGCCGACATCATTCCGGTTCAACCCCAGAAGCGCAGATGACATATTTTCAGAGTTTTTTGGGTTTTCCAGCCCCTTTGGTGGAATGGGGGACATGGGTGGCCGTGGTGGTCCCTCTGGATTTTCCAGGGGTGGCATGTTTGGTGAAGATATTTTTGCTCAATTTAGGAGTGGAGCTGGAGAGGGCTCTGGGCATATGCCAAGGAAAGGTGCTGCTATTGAGAAAACATTGCATTGTAGTTTGGAGGATTTGTATAAAGGGACTACCAAAAAAATGAAGATCTCAAGGGATGTTAGTGATTCCAGTGGGTGA | 582 | 0.4794 | MGVDYYKVLQVDRGASDDDLKKAYRKLAMKWHPDKNPNNKKESEAKFKQISEAYDVLSDPQKRAVYDQYGEEGLKGQVPPPGAGGFPGDGGPTSFRFNPRSADDIFSEFFGFSSPFGGMGDMGGRGGPSGFSRGGMFGEDIFAQFRSGAGEGSGHMPRKGAAIEKTLHCSLEDLYKGTTKKMKISRDVSDSSG | 193 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Sebi587g00004 | 193 | Gene3D | - | 153 | 193 | - | - | |
| Sebi587g00004 | 193 | MobiDBLite | consensus disorder prediction | 73 | 94 | - | - | |
| Sebi587g00004 | 193 | SMART | dnaj_3 | 3 | 62 | IPR001623 | - | |
| Sebi587g00004 | 193 | PRINTS | DnaJ domain signature | 24 | 39 | IPR001623 | - | |
| Sebi587g00004 | 193 | PRINTS | DnaJ domain signature | 62 | 81 | IPR001623 | - | |
| Sebi587g00004 | 193 | PRINTS | DnaJ domain signature | 6 | 24 | IPR001623 | - | |
| Sebi587g00004 | 193 | PRINTS | DnaJ domain signature | 42 | 62 | IPR001623 | - | |
| Sebi587g00004 | 193 | PANTHER | DNAJ HOMOLOG SUBFAMILY C MEMBER | 1 | 192 | - | - | |
| Sebi587g00004 | 193 | Pfam | DnaJ domain | 4 | 67 | IPR001623 | - | |
| Sebi587g00004 | 193 | CDD | DnaJ | 4 | 59 | IPR001623 | - | |
| Sebi587g00004 | 193 | FunFam | DnaJ subfamily B member 13 | 3 | 120 | - | - | |
| Sebi587g00004 | 193 | SUPERFAMILY | Chaperone J-domain | 3 | 119 | IPR036869 | - | |
| Sebi587g00004 | 193 | ProSiteProfiles | dnaJ domain profile. | 4 | 70 | IPR001623 | - | |
| Sebi587g00004 | 193 | Gene3D | DnaJ domain | 3 | 123 | IPR036869 | - | |
| Sebi587g00004 | 193 | ProSitePatterns | Nt-dnaJ domain signature. | 47 | 66 | IPR018253 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Sebi587g00004 | Sebi-Chr587 | 238750 | 239764 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Sebi587g00004 | 5 | 74 | C2H2 Transcription Factor Family | AT1G74250 | 37.838 | 6.35e-11 | 58.9 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Sebi587g00004 | K09510 | - | gmx:100818358 | 281.952 |