Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi587g00003 ATGGCGGAGTCGCATTCCTCCGCTCCGACCACTCCTCCTCCTTCCTCCGCTAACCGTGAAGCTTCTCCGTCGGAGGAAAATGCAGCGAACGGCTCTCAAACTCGGTTGCGGTCACCGGAGTCTCGCCGTGTGAGCATCACCTTTGGAAGAACCAGCTGGAGTTACGGGGATGAATCAGCCATTGTTAGGGACGATACCTGGTCCTGCATCGCCGTCGTATTCAGCTTTTGGTTCTTCGTGTCGGTGACTTTGATACTGGGGGTTTATGGCTCGATGGTCATCATGCTTGGTCCAGAATCTTCAATTGTTTTACAACCTAGCCCTGTTTTCGTGCAATATGTGAAGGTAGAAAACTTAGACGAAAAGCCAGGACCCATTCTTTATGGCACATATCAATATCCACCTCTTGATGTTGTTACCACTTGGGGAGAAACTCGCAATGTATCTCTTCCCTCTGGCTTACATAAGGAATGGAAATATTATCTGAATAGAGGATCTGAAGTAAATATCTCGTATAGCTTGAGCTCTGAGAGCTCTTCCATTTTCCTGGTAATTGCAGAAGGGGCTGAAAGCCTCTCTCTGTGGCTGGAGGACCCAACATATCCTAATACAACTCTGTCTTGGAACATGATCCATGGAACTGGTATGATTACACAGGAAATATTCTTCTCGTCCAGCTATTATGTAGCAGTGGGTAATTTGGATGAGGAAGTGGAGAACACATCCAATGATGAATGGTATGTCAAAGTGTCCTATGGACCAAGATGGGTGACATATATTTTTGGCATAGGTGGAATGACTTTGCTTATGTTTTGGGCCTTCAAATTCTTGAACAAACTCCAGCGTGGCCGTGAAGATAGAGCGGAAGTTGGACATGATGGAACAGCATCTCAGAGAGCCCCTTTACTTTCTCGCAAAGAAGATGATCTATCAAGTTGGGGTTCATCATATGATTCCTTACCAGAGGATGAAGAGGATCTTGACCTTCTAGCAGGAGGTTCCATTGATGGGAAGTTATCAGGTGATGGAGAAACCAGTAATAATACCCGGCGTCTCTGTGCAATTTGCTTTGATGCTCCACGGGACTGCTTCTTCCTTCCATGCGGGCACTGTGCAGCTTGTTTTGCATGTGGAACCACGATAGCAGAGGCAGCTGGTACATGCCCTGTTTGTCGTAGGAACATGAAGAAGCTAATGGTACCTGCTGGTGAGGGTCGTATTGGCCATTGCAGGAAAACCTGA 1242 0.4686 MAESHSSAPTTPPPSSANREASPSEENAANGSQTRLRSPESRRVSITFGRTSWSYGDESAIVRDDTWSCIAVVFSFWFFVSVTLILGVYGSMVIMLGPESSIVLQPSPVFVQYVKVENLDEKPGPILYGTYQYPPLDVVTTWGETRNVSLPSGLHKEWKYYLNRGSEVNISYSLSSESSSIFLVIAEGAESLSLWLEDPTYPNTTLSWNMIHGTGMITQEIFFSSSYYVAVGNLDEEVENTSNDEWYVKVSYGPRWVTYIFGIGGMTLLMFWAFKFLNKLQRGREDRAEVGHDGTASQRAPLLSRKEDDLSSWGSSYDSLPEDEEDLDLLAGGSIDGKLSGDGETSNNTRRLCAICFDAPRDCFFLPCGHCAACFACGTTIAEAAGTCPVCRRNMKKLMVPAGEGRIGHCRKT 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi587g00003 413 FunFam E3 ubiquitin-protein ligase APD2 342 400 - -
Sebi587g00003 413 MobiDBLite consensus disorder prediction 1 42 - -
Sebi587g00003 413 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 400 IPR013083 -
Sebi587g00003 413 SUPERFAMILY RING/U-box 352 398 - -
Sebi587g00003 413 Pfam Domain of unknown function (DUF4792) 124 192 IPR032008 -
Sebi587g00003 413 SMART ring_2 353 391 IPR001841 -
Sebi587g00003 413 ProSiteProfiles Zinc finger RING-type profile. 353 392 IPR001841 -
Sebi587g00003 413 Pfam Domain of unknown function (DUF4793) 240 272 IPR032010 -
Sebi587g00003 413 Pfam Zinc finger, C3HC4 type (RING finger) 350 397 - -
Sebi587g00003 413 MobiDBLite consensus disorder prediction 288 321 - -
Sebi587g00003 413 PANTHER OS05G0521000 PROTEIN 57 236 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi587g00003 Sebi-Chr587 211716 217721 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi587g00003 326 399 C3H Transcription Factor Family AT3G06140 31.081 5.57e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi587g00003 - - gmx:100791057 521.931