Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Sebi587g00003 | ATGGCGGAGTCGCATTCCTCCGCTCCGACCACTCCTCCTCCTTCCTCCGCTAACCGTGAAGCTTCTCCGTCGGAGGAAAATGCAGCGAACGGCTCTCAAACTCGGTTGCGGTCACCGGAGTCTCGCCGTGTGAGCATCACCTTTGGAAGAACCAGCTGGAGTTACGGGGATGAATCAGCCATTGTTAGGGACGATACCTGGTCCTGCATCGCCGTCGTATTCAGCTTTTGGTTCTTCGTGTCGGTGACTTTGATACTGGGGGTTTATGGCTCGATGGTCATCATGCTTGGTCCAGAATCTTCAATTGTTTTACAACCTAGCCCTGTTTTCGTGCAATATGTGAAGGTAGAAAACTTAGACGAAAAGCCAGGACCCATTCTTTATGGCACATATCAATATCCACCTCTTGATGTTGTTACCACTTGGGGAGAAACTCGCAATGTATCTCTTCCCTCTGGCTTACATAAGGAATGGAAATATTATCTGAATAGAGGATCTGAAGTAAATATCTCGTATAGCTTGAGCTCTGAGAGCTCTTCCATTTTCCTGGTAATTGCAGAAGGGGCTGAAAGCCTCTCTCTGTGGCTGGAGGACCCAACATATCCTAATACAACTCTGTCTTGGAACATGATCCATGGAACTGGTATGATTACACAGGAAATATTCTTCTCGTCCAGCTATTATGTAGCAGTGGGTAATTTGGATGAGGAAGTGGAGAACACATCCAATGATGAATGGTATGTCAAAGTGTCCTATGGACCAAGATGGGTGACATATATTTTTGGCATAGGTGGAATGACTTTGCTTATGTTTTGGGCCTTCAAATTCTTGAACAAACTCCAGCGTGGCCGTGAAGATAGAGCGGAAGTTGGACATGATGGAACAGCATCTCAGAGAGCCCCTTTACTTTCTCGCAAAGAAGATGATCTATCAAGTTGGGGTTCATCATATGATTCCTTACCAGAGGATGAAGAGGATCTTGACCTTCTAGCAGGAGGTTCCATTGATGGGAAGTTATCAGGTGATGGAGAAACCAGTAATAATACCCGGCGTCTCTGTGCAATTTGCTTTGATGCTCCACGGGACTGCTTCTTCCTTCCATGCGGGCACTGTGCAGCTTGTTTTGCATGTGGAACCACGATAGCAGAGGCAGCTGGTACATGCCCTGTTTGTCGTAGGAACATGAAGAAGCTAATGGTACCTGCTGGTGAGGGTCGTATTGGCCATTGCAGGAAAACCTGA | 1242 | 0.4686 | MAESHSSAPTTPPPSSANREASPSEENAANGSQTRLRSPESRRVSITFGRTSWSYGDESAIVRDDTWSCIAVVFSFWFFVSVTLILGVYGSMVIMLGPESSIVLQPSPVFVQYVKVENLDEKPGPILYGTYQYPPLDVVTTWGETRNVSLPSGLHKEWKYYLNRGSEVNISYSLSSESSSIFLVIAEGAESLSLWLEDPTYPNTTLSWNMIHGTGMITQEIFFSSSYYVAVGNLDEEVENTSNDEWYVKVSYGPRWVTYIFGIGGMTLLMFWAFKFLNKLQRGREDRAEVGHDGTASQRAPLLSRKEDDLSSWGSSYDSLPEDEEDLDLLAGGSIDGKLSGDGETSNNTRRLCAICFDAPRDCFFLPCGHCAACFACGTTIAEAAGTCPVCRRNMKKLMVPAGEGRIGHCRKT | 413 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Sebi587g00003 | 413 | FunFam | E3 ubiquitin-protein ligase APD2 | 342 | 400 | - | - | |
Sebi587g00003 | 413 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Sebi587g00003 | 413 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 340 | 400 | IPR013083 | - | |
Sebi587g00003 | 413 | SUPERFAMILY | RING/U-box | 352 | 398 | - | - | |
Sebi587g00003 | 413 | Pfam | Domain of unknown function (DUF4792) | 124 | 192 | IPR032008 | - | |
Sebi587g00003 | 413 | SMART | ring_2 | 353 | 391 | IPR001841 | - | |
Sebi587g00003 | 413 | ProSiteProfiles | Zinc finger RING-type profile. | 353 | 392 | IPR001841 | - | |
Sebi587g00003 | 413 | Pfam | Domain of unknown function (DUF4793) | 240 | 272 | IPR032010 | - | |
Sebi587g00003 | 413 | Pfam | Zinc finger, C3HC4 type (RING finger) | 350 | 397 | - | - | |
Sebi587g00003 | 413 | MobiDBLite | consensus disorder prediction | 288 | 321 | - | - | |
Sebi587g00003 | 413 | PANTHER | OS05G0521000 PROTEIN | 57 | 236 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Sebi587g00003 | Sebi-Chr587 | 211716 | 217721 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Sebi587g00003 | 326 | 399 | C3H Transcription Factor Family | AT3G06140 | 31.081 | 5.57e-07 | 49.3 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Sebi587g00003 | - | - | gmx:100791057 | 521.931 |