Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi585g00007 ATGGCGGGAGCTACAGGAAGAACCCTCTTCTCCCTCTCTCCTTCCTTCACTACACGCCTCTCTCATCATGCCACGCGCCTCCCATTATTTCTCACTCGCTCGAAGCCCATTACCGTTTTGCCACGGTTCAGGCCTCTCTGTTCCATCACCGCCACACCAGAAACCATGGACCCGGAGCAGATGAAGCACTCCATGCTCCTCGAGAAGCTCAGGATGAGACACCTCAAGGACAGTGCCAAAACCCCAGAAGCCAAGAATCCCCCAAAGAAGGGTCCTGCTGTTGCTGCTGAGAATGAGAGTACTGAGATGGGGAAGAAATCTGAGGGGAAGAAGAAGGTGGTGGAGGTTGGGAGTTTTGAGGAGTTGGGAATCAGTGATGAGGTTATGGGGGCTGTTAGGGAAATGGGTATTGAAGTTCCCACTGAGATACAGTGTATTGGTGTCCCTGCTATGTTGGAAGGGAAGAGTGTGGTTTTAGGGTCTCATACTGGGTCTGGAAAGACTCTGGCTTACTTGCTTCCCCTTGTTCAGTTGCTAAGACGGGATGAACAATTGAATGGAATGCTGATGAAGCCCAGGCGTCCCCGAGCTGTTGTGTTATGCCCTACAAGGGAGTTGTCTGAGCAGGTTTTTCGAGTTGCAAAATCAATAAGCCATCATGCACGATTCAGGTGTACCATGGTAAGTGGTGGTGGTCGTCTTAGGCCTCAGGAGGATTCACTTAATAACCCCATAGATATGGTAGTTGGTACTCCTGGCAGGATTCTTCAACATATAGAGGAGGGAAATATGGTATATGGTGACATCAAATACTTGGTATTGGATGAGGCAGACACAATGTTTGATCGGGGCTTTGGTCCTGACATACACAAATTTCTAGGCCCATTAAAACGTCGTACTTCAAAATCTGATGGCCTAGGTTTTCAGACTATCCTGGTCACAGCAACCATGACAAAGGCTGTGCAATTGCTGATTGATGAGGAGTTTCAAGGAATTGTACATCTGCGCACATCAACGTTGCATAAAAAGATTTCTTCTGCTCGTCATGATTTTATTAAACTCTCGGGTTCTGAGAACAAGATGGAAGCATTACTTCAGGTACTAGAGCCAAGCCTGGCAAAAGGGAACAGGGTGATGGTTTTTCTGCAATACATTGGATTCGAGCCGTGCTGTGGATCACTTTCTTGGGTTGAAAACCTCAACAAGTTTAAGAGTGACAGTGAAGATTGTCCTACATTGGTTTGCACGGACTTAGCTGCTAGGGGTCTGGACTTGGATGTAGATCATGTTGTCATGTTTGACTTCCCTTTGAATTCTATCGACTACCTTCATCGCACAGGTAGAACTGCTCGTATGGGTGCAAAAGGGAAAGTAACAAGTTTGGTTGCTAAAAAGGACTTGATCTTGGCCAACAAAATAGAGGAGGCAGTAAGAAAGAACGAGAGTTTGGAGGCTATCACTAAAGAAAGTGTCCGAAAGGACATTGTCAGGACCCAAATCACTGAGCAGAGGGGAAGGAGCAAAACATTGGTTAAAGTTTCAAAAGCTAAGCACAAATCTGGTGGCCGCACCAATGCTGGGAATACTGGATCAGGTATGAAATCTGGTAAAGGATCACCACCAGCAAAATCTATGAAGAAAGGGATTAATGTTTCAAAATCTGTAAAATCTTCCAGTTCAACTAGCTTGAGAAAAGCTTCTTCAGAGAATAAGCAAAAAAGAAAAAGGACCACTGCCAACAATTCTACAAATTCTAAACTCAGTGTTGTGGGGTTTAGGGGGCGAAATTCTTCATCTAGTAAGAAGCAATCTCTTTCGTGA 1821 0.4552 MAGATGRTLFSLSPSFTTRLSHHATRLPLFLTRSKPITVLPRFRPLCSITATPETMDPEQMKHSMLLEKLRMRHLKDSAKTPEAKNPPKKGPAVAAENESTEMGKKSEGKKKVVEVGSFEELGISDEVMGAVREMGIEVPTEIQCIGVPAMLEGKSVVLGSHTGSGKTLAYLLPLVQLLRRDEQLNGMLMKPRRPRAVVLCPTRELSEQVFRVAKSISHHARFRCTMVSGGGRLRPQEDSLNNPIDMVVGTPGRILQHIEEGNMVYGDIKYLVLDEADTMFDRGFGPDIHKFLGPLKRRTSKSDGLGFQTILVTATMTKAVQLLIDEEFQGIVHLRTSTLHKKISSARHDFIKLSGSENKMEALLQVLEPSLAKGNRVMVFLQYIGFEPCCGSLSWVENLNKFKSDSEDCPTLVCTDLAARGLDLDVDHVVMFDFPLNSIDYLHRTGRTARMGAKGKVTSLVAKKDLILANKIEEAVRKNESLEAITKESVRKDIVRTQITEQRGRSKTLVKVSKAKHKSGGRTNAGNTGSGMKSGKGSPPAKSMKKGINVSKSVKSSSSTSLRKASSENKQKRKRTTANNSTNSKLSVVGFRGRNSSSSKKQSLS 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi585g00007 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 268 475 IPR027417 -
Sebi585g00007 606 MobiDBLite consensus disorder prediction 577 606 - -
Sebi585g00007 606 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 117 145 IPR014014 GO:0003724
Sebi585g00007 606 SMART helicmild6 376 453 IPR001650 -
Sebi585g00007 606 Pfam Helicase conserved C-terminal domain 399 453 IPR001650 -
Sebi585g00007 606 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 148 335 IPR014001 -
Sebi585g00007 606 Gene3D - 85 336 IPR027417 -
Sebi585g00007 606 Pfam DEAD/DEAH box helicase 141 322 IPR011545 GO:0003676|GO:0005524
Sebi585g00007 606 CDD SF2_C_DEAD 348 462 - -
Sebi585g00007 606 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 339 495 IPR001650 -
Sebi585g00007 606 SMART ultradead3 136 355 IPR014001 -
Sebi585g00007 606 MobiDBLite consensus disorder prediction 77 109 - -
Sebi585g00007 606 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 105 328 IPR027417 -
Sebi585g00007 606 CDD DEADc 128 327 - -
Sebi585g00007 606 MobiDBLite consensus disorder prediction 550 566 - -
Sebi585g00007 606 Gene3D - 397 589 IPR027417 -
Sebi585g00007 606 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 59 489 - -
Sebi585g00007 606 MobiDBLite consensus disorder prediction 521 535 - -
Sebi585g00007 606 MobiDBLite consensus disorder prediction 504 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi585g00007 Sebi-Chr585 549026 555760 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi585g00007 116 475 Eukaryotic Initiation Factors Gene Family AT3G19760 26.440 1.70e-32 127
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi585g00007 - - gmx:100805709 807.364