Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi585g00006 ATGGTAGTTTCCAACTTTAAGGACTTGGGTTTGATTGAGGAGCTTTTTGAGGTCATGGAAGGGATTGGTGATTTTGTTCCAAGTGAGATACAGTGTGTGGTTATTCCAGCTATTTTGGAAGGGAAGAATGTGTTGTTGAGTTCACCGTCTGAGCCTGACAGGACCTTGGCCTACTTGTTGCCCCTTATTCAGCTGCTAAGACGGGATAGAGAGTTGCTTGGTCCGAATTCAAAGCATCCCCGAGCCATTGTGCTTTGTGCTTCAGAGGAGAAAGCTGAACAGTGCTTCAATGCTGCAGGGTATGTCATCCATAATGCAGATTTGAAGTCTGCAAAGAATTGTGCTTCAGCAGACAACAAGCAGTCAAATTCCTCAATTGGCCTCATGATTGGAACTCCTTGTGAGATTCTTCAATACATTGAAGAGGGGATTGTTGTTCCTGCTGAATTAAGATACTTGGTATTGGATGATGCGGATTGCATGCTTTGTAGTGGCCTTAGTCCTGAAATCCATAAAATTCTCAGACCCTTACAAGATCATGATTCAAAATCTACTGTCAAAAGGTTGCAAACTATTTTGGCAATTTCAACAATATCTGAGGTTTTGGGTGAAGAATCCCCTCTTGTAAAGCATCTTCAGCATGATCATGCAGGAAATGTTTCTGCAATGTCTTTAGAAATGGAGCAAACAGAAGTCTTTCTTTTCACTGAGTCTCTGGATGCTCTTAGGAAAAAAGTGGTGGAGGCCATGGATTCCCTTTTGAAATAA 768 0.4193 MVVSNFKDLGLIEELFEVMEGIGDFVPSEIQCVVIPAILEGKNVLLSSPSEPDRTLAYLLPLIQLLRRDRELLGPNSKHPRAIVLCASEEKAEQCFNAAGYVIHNADLKSAKNCASADNKQSNSSIGLMIGTPCEILQYIEEGIVVPAELRYLVLDDADCMLCSGLSPEIHKILRPLQDHDSKSTVKRLQTILAISTISEVLGEESPLVKHLQHDHAGNVSAMSLEMEQTEVFLFTESLDALRKKVVEAMDSLLK 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi585g00006 255 Coils Coil 239 255 - -
Sebi585g00006 255 Gene3D - 1 203 IPR027417 -
Sebi585g00006 255 SMART poly_2 194 255 IPR002004 GO:0003723
Sebi585g00006 255 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 35 216 IPR014001 -
Sebi585g00006 255 SUPERFAMILY PABC (PABP) domain 200 251 IPR036053 GO:0003723
Sebi585g00006 255 Gene3D - 204 255 - -
Sebi585g00006 255 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 5 199 - -
Sebi585g00006 255 Pfam DEAD/DEAH box helicase 29 194 IPR011545 GO:0003676|GO:0005524
Sebi585g00006 255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 198 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi585g00006 Sebi-Chr585 545315 547223 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi585g00006 3 177 Eukaryotic Initiation Factors Gene Family AT3G19760 22.346 1.54e-09 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi585g00006 - - gmx:100800575 404.831