Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi585g00003 ATGGCGACGATAATCTCTGCACCAAAAATTACGATTCCGGCACATGCAGCATTTAGCAGCATTCGATTCGAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAATGAGACACACTTGTATGATCTCTTCAGCCAAGTGGCTCAGGTGGTTTCCGCTAGGGTTTGCAGGGATCACACGATGCGATCCTCTCTCGGTTACGCTTATGTGAATTTTGCCAATGCTCAAGATGCGGCTAATGCCATGGAACATCTGAACTTCACTCCTCTGAATGGGAAACCAATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATTAAGAACCTTGAAAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAACTGTGCTTTCCTGTAAGGTGGCTGTGGATATCAGTGGCCAATCAAAAGGATATGGTTTTGTGCAATTTGACAATGAAAAGTCTGCACAGGATTCCATCCAACAGTTAAATGGTATGCTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTGATGAGGACCTTAAGGAGCTCTTTGGAACCCATGGTACAATCACTAGTGTTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCAGCTGCTGTAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAGGGCTCAAAGCAAAGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAATTGCAAGCTGCTAATTTGTACTTGAAAAACCTTGCTGATAACATTAAAGATGCAAATTTGAAGGAGCTATTTTCTGAGTTTGGAACAATCACATCTTGCAAGGTGATGGTCGATTCAAATGGGCATAGCAAGGGCTCTGGTTTTGTTGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAAATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGCAAAGAAGTGAGGAAGGCTTTTCTGCAGGCTCAGTTTTCTCAATTCCAAGCACAAATTGGAATTCCATCATTCCCTGAGTTTTCTCAATTCCAAGCACCAAATGGAATCCCATCTTTCCATGCAGGATATCCTGGATATCCATGGGCAACAAGACTTGCTCCTCAACAGCTATATTATGATGAAGGCACACCAAGTTACATGACAACTCAACCAACAGGATATGGCTTCCAGCAACAATTGTATCCAGGTATGCACTCTGTTGCTCCAAATATCACTATGCCATATCATCATCAGAGGCAGGGTCATCCTAGGCAAAGGATGGGCTATCGTAGAGGTGGAAACCGCCACCACAACCAGCGACGTAACTCTAACCAATGGTTTAGAGATAATCGGCAACGACCTGGTGCATCAGGTTCTGAAGTTGGTGATCAGCTTGGTTGA 1587 0.4159 MATIISAPKITIPAHAAFSSIRFENVSLYVGDLEGNVNETHLYDLFSQVAQVVSARVCRDHTMRSSLGYAYVNFANAQDAANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLEKSIDNKALHDTFAAFGTVLSCKVAVDISGQSKGYGFVQFDNEKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFSETFTDEDLKELFGTHGTITSVVVMKDVNGKSRCFGFVNFESPDSAAAVVERLNGTTTNDEKVLFVGRAQSKAELKAKYEQEKIKRYEKLQAANLYLKNLADNIKDANLKELFSEFGTITSCKVMVDSNGHSKGSGFVAFSTPEEASKALNEMNGKMIQGKPLYVAVAQRKEVRKAFLQAQFSQFQAQIGIPSFPEFSQFQAPNGIPSFHAGYPGYPWATRLAPQQLYYDEGTPSYMTTQPTGYGFQQQLYPGMHSVAPNITMPYHHQRQGHPRQRMGYRRGGNRHHNQRRNSNQWFRDNRQRPGASGSEVGDQLG 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi585g00003 528 Gene3D - 114 188 IPR012677 -
Sebi585g00003 528 FunFam Polyadenylate-binding protein 288 393 - -
Sebi585g00003 528 CDD RRM2_I_PABPs 112 187 IPR045305 -
Sebi585g00003 528 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Sebi585g00003 528 Gene3D - 189 286 IPR012677 -
Sebi585g00003 528 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Sebi585g00003 528 SUPERFAMILY RNA-binding domain, RBD 26 193 IPR035979 GO:0003676
Sebi585g00003 528 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 305 382 IPR000504 GO:0003723
Sebi585g00003 528 FunFam Polyadenylate-binding protein 112 195 - -
Sebi585g00003 528 MobiDBLite consensus disorder prediction 481 500 - -
Sebi585g00003 528 MobiDBLite consensus disorder prediction 476 528 - -
Sebi585g00003 528 SUPERFAMILY RNA-binding domain, RBD 197 286 IPR035979 GO:0003676
Sebi585g00003 528 Gene3D - 20 113 IPR012677 -
Sebi585g00003 528 PANTHER RNA BINDING PROTEIN 27 88 - -
Sebi585g00003 528 CDD RRM3_I_PABPs 204 284 - -
Sebi585g00003 528 Gene3D - 287 391 IPR012677 -
Sebi585g00003 528 Coils Coil 302 322 - -
Sebi585g00003 528 SMART rrm2_1 306 378 IPR003954 GO:0003676
Sebi585g00003 528 SMART rrm2_1 27 100 IPR003954 GO:0003676
Sebi585g00003 528 SMART rrm2_1 206 278 IPR003954 GO:0003676
Sebi585g00003 528 SMART rrm2_1 115 187 IPR003954 GO:0003676
Sebi585g00003 528 FunFam Polyadenylate-binding protein 19 111 - -
Sebi585g00003 528 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 507 IPR006515 GO:0003723
Sebi585g00003 528 CDD RRM4_I_PABPs 306 382 - -
Sebi585g00003 528 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 186 IPR000504 GO:0003723
Sebi585g00003 528 SUPERFAMILY RNA-binding domain, RBD 303 393 IPR035979 GO:0003676
Sebi585g00003 528 SMART rrm1_1 115 187 IPR000504 GO:0003723
Sebi585g00003 528 SMART rrm1_1 206 279 IPR000504 GO:0003723
Sebi585g00003 528 SMART rrm1_1 306 378 IPR000504 GO:0003723
Sebi585g00003 528 SMART rrm1_1 27 100 IPR000504 GO:0003723
Sebi585g00003 528 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 274 IPR000504 GO:0003723
Sebi585g00003 528 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Sebi585g00003 528 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 307 375 IPR000504 GO:0003723
Sebi585g00003 528 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi585g00003 Sebi-Chr585 173120 176143 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi585g00003 25 496 Eukaryotic Initiation Factors Gene Family AT1G71770 56.042 0.0 532
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi585g00003 K13126 - gmx:100783163 690.649