Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi585g00002 ATGGCGACGGTAATCTCTGCACCAAAAATGACGATTCCGACACATGCAACATTTAGCGGCATTCGATTCGAAAATGTGTCACTGTATGTTGGGGATCTTGAGGGGAATGTGAATGAGACACACCTGTATGATCTCTTCAGCCAAGTGGCTCAGGTGGTTTCCGCTAGGGTTTGCAGGGATCACACGATGCGATCATCTCTCGGTTACGCTTATGTGAATTTTGCCAATGCTCAAGATGCGGCTAATGCCATGGAACATCTGAACTTCACTCCTCTGAATGGGAAACCAATTCGAATTATGTTTTCTCATAGAGATCCTAGCATTCGCAAAAGTGGATATGCAAATGTCTTCATTAAGAACCTTGACAAATCAATAGATAACAAGGCATTGCATGACACTTTTGCTGCCTTTGGAACTGTGCTTTCCTGTAAGGTGGCTGTGGATATCAGTGGCCAATCAAAAGGATATGGTTTTGTGCAATTTGACAATGAAAAGTCTGCACAGGATTCCATCCAACAGTTAAATGGTATGCTGATAAATGATAAAAAAGTTTATGTTGGATCCTTTATTCGGCGCCAGGAAAGGGCTCAAGCAAATGGATCACCAAAATTCACTAATGTGTATGTGAAAAACTTTTCTGAAACATTTACTGATGAGGACCTTAAGGAGCTCTTTGGCACCCATGGTACAATCACTAGTGCTGTGGTCATGAAAGATGTGAATGGGAAATCTAGATGTTTTGGTTTTGTGAATTTTGAAAGTCCAGATTCAGCAGCTGCTGTAGTTGAGAGGTTGAATGGAACCACAACAAATGATGAAAAAGTTTTATTTGTGGGAAGGGCTCAAAGCAAAGCAGAGAGGAATGCAGAGTTAAAAGCAAAATATGAGCAGGAAAAAATTAAGAGATATGAGAAACTGCAAGCTGCTAATTTGTACTTGAAAAACCTTGCTGATAACATTAAAGATGCAAATTTGAAGGAGCTGTTTTCTGAGTTTGGAACAATCACATCTTGCAAGGTGATGGTTGATTCAAATGGACATAGCAAGGGCTCTGGTTTTGTTGCCTTTTCTACTCCTGAGGAAGCAAGTAAAGCTTTGAATGAAATGAATGGAAAAATGATTCAAGGGAAGCCTCTGTATGTTGCTGTGGCCCAACGCAAAGAAGTGAGGAAGGCTTTTCTGCAGGCTCAGTTTTCTCAATTCCAAGCACAAATTGGAATTCCATCATTCCCTGAGTTTTCTCAATTCCAAGCACCAAATGGAATTCCATCTTTCCATGCAGGATATCCTGGATATCCATGGGCAACAGGACTTGCCCCTCAACAACTATATTATGATGAAGGCACACCAAGTTACATGACAACTCAACCAATAGGATATGGCTTTCAGCAACAATTGTATCCAGGTATGCACTCTGTTGATCCAAATATCACTATGCCATATCATCATCAGAGGCAGGGTCATCCTAGGCAAAGGATGGGCTATCGTAGAGGTGGAAACCGCCACCACAACCAGCGACGTAACTCTAACCAATGGTTTAGAGATAATTGGCAGCGACCTGGTGCATCAGGTTCTGAATTTGGTGATCAACTTGGTTGA 1599 0.4159 MATVISAPKMTIPTHATFSGIRFENVSLYVGDLEGNVNETHLYDLFSQVAQVVSARVCRDHTMRSSLGYAYVNFANAQDAANAMEHLNFTPLNGKPIRIMFSHRDPSIRKSGYANVFIKNLDKSIDNKALHDTFAAFGTVLSCKVAVDISGQSKGYGFVQFDNEKSAQDSIQQLNGMLINDKKVYVGSFIRRQERAQANGSPKFTNVYVKNFSETFTDEDLKELFGTHGTITSAVVMKDVNGKSRCFGFVNFESPDSAAAVVERLNGTTTNDEKVLFVGRAQSKAERNAELKAKYEQEKIKRYEKLQAANLYLKNLADNIKDANLKELFSEFGTITSCKVMVDSNGHSKGSGFVAFSTPEEASKALNEMNGKMIQGKPLYVAVAQRKEVRKAFLQAQFSQFQAQIGIPSFPEFSQFQAPNGIPSFHAGYPGYPWATGLAPQQLYYDEGTPSYMTTQPIGYGFQQQLYPGMHSVDPNITMPYHHQRQGHPRQRMGYRRGGNRHHNQRRNSNQWFRDNWQRPGASGSEFGDQLG 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi585g00002 532 Coils Coil 306 326 - -
Sebi585g00002 532 FunFam Polyadenylate-binding protein 19 111 - -
Sebi585g00002 532 NCBIfam polyadenylate binding protein, human types 1, 2, 3, 4 family 27 510 IPR006515 GO:0003723
Sebi585g00002 532 CDD RRM2_I_PABPs 112 187 IPR045305 -
Sebi585g00002 532 FunFam Polyadenylate-binding protein 196 291 - -
Sebi585g00002 532 CDD RRM4_I_PABPs 310 386 - -
Sebi585g00002 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 26 104 IPR000504 GO:0003723
Sebi585g00002 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 205 283 IPR000504 GO:0003723
Sebi585g00002 532 Gene3D - 115 188 IPR012677 -
Sebi585g00002 532 FunFam Polyadenylate-binding protein 112 195 - -
Sebi585g00002 532 SUPERFAMILY RNA-binding domain, RBD 307 397 IPR035979 GO:0003676
Sebi585g00002 532 SMART rrm1_1 115 187 IPR000504 GO:0003723
Sebi585g00002 532 SMART rrm1_1 310 382 IPR000504 GO:0003723
Sebi585g00002 532 SMART rrm1_1 206 279 IPR000504 GO:0003723
Sebi585g00002 532 SMART rrm1_1 27 100 IPR000504 GO:0003723
Sebi585g00002 532 CDD RRM3_I_PABPs 204 284 - -
Sebi585g00002 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 114 186 IPR000504 GO:0003723
Sebi585g00002 532 SMART rrm2_1 115 187 IPR003954 GO:0003676
Sebi585g00002 532 SMART rrm2_1 310 382 IPR003954 GO:0003676
Sebi585g00002 532 SMART rrm2_1 206 278 IPR003954 GO:0003676
Sebi585g00002 532 SMART rrm2_1 27 100 IPR003954 GO:0003676
Sebi585g00002 532 Gene3D - 289 395 IPR012677 -
Sebi585g00002 532 Gene3D - 23 114 IPR012677 -
Sebi585g00002 532 PANTHER RNA BINDING PROTEIN 24 88 - -
Sebi585g00002 532 MobiDBLite consensus disorder prediction 485 504 - -
Sebi585g00002 532 MobiDBLite consensus disorder prediction 481 532 - -
Sebi585g00002 532 SUPERFAMILY RNA-binding domain, RBD 197 289 IPR035979 GO:0003676
Sebi585g00002 532 Coils Coil 281 301 - -
Sebi585g00002 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 207 274 IPR000504 GO:0003723
Sebi585g00002 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 311 379 IPR000504 GO:0003723
Sebi585g00002 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 28 98 IPR000504 GO:0003723
Sebi585g00002 532 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 116 184 IPR000504 GO:0003723
Sebi585g00002 532 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 309 386 IPR000504 GO:0003723
Sebi585g00002 532 FunFam Polyadenylate-binding protein 292 397 - -
Sebi585g00002 532 SUPERFAMILY RNA-binding domain, RBD 26 193 IPR035979 GO:0003676
Sebi585g00002 532 Gene3D - 189 288 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi585g00002 Sebi-Chr585 136895 139927 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi585g00002 25 500 Eukaryotic Initiation Factors Gene Family AT1G71770 56.458 0.0 542
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi585g00002 K13126 - gmx:100783163 699.508