Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi584g00006 ATGAACAAAGGTGAAGGAAAAGGAAAGTCTTCAGAGGAGAAGAAGCTTGAGCTGAGGCTTGGTCCACCTGGTGAGGATTGGTCTGAAAGAGATGAGTCTCTACTCTCTCTTGGTTACCTCTCTACCACCAAGCTTCATGCAAAAATGAGCTCCAACAATGGGTTCCAAACCAAGAATATTCCAAACCCTGACACCCCAGCTGGGGCTATGTTACCCTCTCCATGGCCCTCCACAGGGTACCACCAACAGGGCAATAATAAAGCTTCATCATTTCTTCAGTTCCCATCAACCCCACCTGTGATGGGTAAGGATTCTGCATCACAAACCTGTTGCCCTAAGGTGGTAGAGTTGCAGAATGGTGATAAGAAAGTGTTCTCTCCCTCTTCTGCAAATACAGCTGTGCCTAACAGCTCTCAGAAAAGAACTGCTCCTGGTCCAGTTGTGGGTTGGCCTCCAATTCGTTCGTTCAGGAAGAACCTTACTAGCAGCACCTCTTCTAAGCCATCACCACCTGAGTCCCAATCTCCTCAGCATAACAAGGTTGCTGGTAAAAAACCTATTGACAATTATGGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTCCCAATTGGGAGAAAAGTGGACCTTAATGCTTACGACAGCTATGAAAATCTTTCTTCTGCAGTGGATGAGCTCTTTAGAGGCCTCCTTGCAGCTCAACGAGATTCCTCTGCTGGTGGAGTGAACAACAACCAAGAGGAAGAGAAACCGATTACAGGTTTATTGGATGGTAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTATCTACAGTGAAGAGGCTGCGAGTGTTGAAGAGTACTGAACTTTCTGCCTTTACCCATCATGGAATGAAACTAGTAGCTTACATTACAGTGCAACTAAGTCACCACCTCCAGCTATGTTTGGATTGGACGTGGAAACGTTTGGATTGGCGTTTTTTTGGAATGGACGTGAGTATTCTTCCAGCAAACGGTCAGTTTTTGCAGTTCCATTTTTACCCTTCTAGTAAGGTTAATGAGCACCTGATGATGGACAACGAGCACCAGAAGTTTCATGGATAA 1134 0.4515 MNKGEGKGKSSEEKKLELRLGPPGEDWSERDESLLSLGYLSTTKLHAKMSSNNGFQTKNIPNPDTPAGAMLPSPWPSTGYHQQGNNKASSFLQFPSTPPVMGKDSASQTCCPKVVELQNGDKKVFSPSSANTAVPNSSQKRTAPGPVVGWPPIRSFRKNLTSSTSSKPSPPESQSPQHNKVAGKKPIDNYGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVNNNQEEEKPITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVSTVKRLRVLKSTELSAFTHHGMKLVAYITVQLSHHLQLCLDWTWKRLDWRFFGMDVSILPANGQFLQFHFYPSSKVNEHLMMDNEHQKFHG 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi584g00006 377 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 13 300 IPR003311 GO:0005634|GO:0006355
Sebi584g00006 377 Gene3D - 188 308 - -
Sebi584g00006 377 ProSiteProfiles PB1 domain profile. 193 297 IPR000270 GO:0005515
Sebi584g00006 377 MobiDBLite consensus disorder prediction 76 104 - -
Sebi584g00006 377 MobiDBLite consensus disorder prediction 122 143 - -
Sebi584g00006 377 MobiDBLite consensus disorder prediction 122 186 - -
Sebi584g00006 377 FunFam Auxin-responsive protein 188 309 - -
Sebi584g00006 377 Pfam AUX/IAA family 16 302 IPR033389 -
Sebi584g00006 377 MobiDBLite consensus disorder prediction 51 107 - -
Sebi584g00006 377 MobiDBLite consensus disorder prediction 1 30 - -
Sebi584g00006 377 MobiDBLite consensus disorder prediction 156 180 - -
Sebi584g00006 377 SUPERFAMILY CAD & PB1 domains 189 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi584g00006 Sebi-Chr584 117713 121734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi584g00006 169 304 B3 DNA Binding Superfamily AT4G23980 31.618 2.87e-13 69.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Sebi584g00006 AUX_IAA 3.8e-69 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi584g00006 K14484 - gmx:100804593 394.43