Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi584g00002 ATGAATTGCACCGACACAACCCGCGTTTGCACTTCCTTCATGGCCTTTAAGCCTCAGCCAAACCAGTCCTTGGCTGTGATACAGAGCATGTTTGATGTGTTGCCAAGTGACATTACTGTTGAAGGCAATGAATGGGGTTACATATTCATCAGAAAAAACTGTTCTTGTGCTGCTGGGATGAAGAAGTATGTATCTAACACCACATTCACTGTGAAATCCAATGAAGGGTTTGTGTATGACATGGTGATGGATGCCTATGATGGACTTGCTTTCTTGCCCAACACCACCCGTTGGGCAAGACAAGGTGCTGTCATACCACTGAGCTTGTTTTGTAGCTGTTCCAGTGGACTGTGGAACTATTTGATGAGTTATGTCATCAGAGATGGGGATAGTATTGAATCATTGGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATGGCATCACCAATCCTGATAGTGCCATTGTTGGTTCTCTATATTATGTACCTCTGAATTCAGTTCCTGGTGATCCTTATCACCTGAAGAATGATACTCCTCCAGTTCCTGTCCCTTCTCCATCTGTTGATGATTTTTCAGATTATCAAATCAACAGTAAGGCTCATGTACCCTATGGATGGGTCATAGGAGGTCTAGGGGTTGGTCTTGCGCTAGTAATATTAAGCATGATTCTGTGTGTGTCCCTGAGATCTTCCAACTGTTTTGTTGAAGATAGAAATCATGCAAAAGATGCTGAGGGAAAGATCTCTCATAAGTTCCATATTTTTGGGAGTCCAAGTTTGTGTTGTGGTTCTGGAAGATACATATGTGGCAAAAGCAAACACGTAAACCAGAAGCAAACTGATGGTGAATCCAGCAGTGACCAAACTACTGTTCCCAAAACTTCAACTCTAAGACCTGAGGTTTTTGACTTGGATAAGCCAGTAGCTTTCACATATGAAGAGATTTTTTCATCAACTGATGGTTTCTCTGATTCAAATCTGCTTGGGCACAGAACATTTGGTTCTGTTTTCTATGGTCTCCTTCGTGACCAGGAAGTTGCTATTAAAAGAATAAAGGCTACTAAAACTAAAGAATTTATGTCAGAGATGAAAGTTCTGAACAAGGTTCATCATGCTAATCTGGTAGAATTGATCGGTTATGCGGCTAGTCAAGATGAGCTTTTCCTTATTTATGAATATGCTCAGAAGGGTTCACTCAGCAGCCATTTGCATGATCCTCAAAATAAGGGTCATCCATCACTTTCTTGGATCACAAGGGTCCAGATTGCGCTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCATACAAAAACTCGCTATGTCCATCAAGATATCAAGACAAGCAACATTTTACTTGATGCTTCTTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTTGTTGGTAAAACAAATGAGGGAGAAACCACAACAACCAAAGTTGTTAGCACATATGGATACCTTGCTCCAGAATACTTGAGCAATCGCCTTGCAACGACTAAAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGATTATATCAGGGAAGAAGGCCATTATTGAAACACAAGGTCCTGAAAGACGATCACTGGCATCTATAATGTTGGCAGTTCTTAGGAACGTACCAGATTCCTTGAGCATGTCAACCATGAGAGACCACATTGATCCTATTATGGTAGGTCTGTATCCCCATGATTGTGTATTCAAGATGGCCATGCTGGCAAAGCAATGTGTAGATGAGGATCCCATTTTACGTCCTGATATGAAGCAAGTTGTGCTTTCCCTCTCACAGATCCTCATGTCTTCTGTTGAGTGGGAAGCGACTCTGGCGGGGAACAGCCAGGTATTTAGTGGGCTTATTCAGGGAAGATAG 1896 0.4188 MNCTDTTRVCTSFMAFKPQPNQSLAVIQSMFDVLPSDITVEGNEWGYIFIRKNCSCAAGMKKYVSNTTFTVKSNEGFVYDMVMDAYDGLAFLPNTTRWARQGAVIPLSLFCSCSSGLWNYLMSYVIRDGDSIESLASRFGVSMDSIETVNGITNPDSAIVGSLYYVPLNSVPGDPYHLKNDTPPVPVPSPSVDDFSDYQINSKAHVPYGWVIGGLGVGLALVILSMILCVSLRSSNCFVEDRNHAKDAEGKISHKFHIFGSPSLCCGSGRYICGKSKHVNQKQTDGESSSDQTTVPKTSTLRPEVFDLDKPVAFTYEEIFSSTDGFSDSNLLGHRTFGSVFYGLLRDQEVAIKRIKATKTKEFMSEMKVLNKVHHANLVELIGYAASQDELFLIYEYAQKGSLSSHLHDPQNKGHPSLSWITRVQIALDAARGLEYIHEHTKTRYVHQDIKTSNILLDASFRAKISDFGLAKLVGKTNEGETTTTKVVSTYGYLAPEYLSNRLATTKSDVYAFGVVLFEIISGKKAIIETQGPERRSLASIMLAVLRNVPDSLSMSTMRDHIDPIMVGLYPHDCVFKMAMLAKQCVDEDPILRPDMKQVVLSLSQILMSSVEWEATLAGNSQVFSGLIQGR 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi584g00002 631 SUPERFAMILY Protein kinase-like (PK-like) 304 603 IPR011009 -
Sebi584g00002 631 Gene3D Phosphorylase Kinase; domain 1 298 397 - -
Sebi584g00002 631 ProSiteProfiles Protein kinase domain profile. 326 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi584g00002 631 Gene3D LysM domain 119 173 IPR036779 -
Sebi584g00002 631 FunFam PTI1-like tyrosine-protein kinase 3 398 617 - -
Sebi584g00002 631 SMART LysM_2 123 167 IPR018392 -
Sebi584g00002 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Sebi584g00002 631 Pfam LysM domain 124 160 IPR018392 -
Sebi584g00002 631 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 36 625 IPR044812 GO:0019199|GO:0045087
Sebi584g00002 631 ProSiteProfiles LysM domain profile. 122 166 IPR018392 -
Sebi584g00002 631 Gene3D Transferase(Phosphotransferase) domain 1 399 621 - -
Sebi584g00002 631 SUPERFAMILY LysM domain 122 167 IPR036779 -
Sebi584g00002 631 SMART serkin_6 326 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi584g00002 631 Pfam Protein tyrosine and serine/threonine kinase 330 602 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi584g00002 Sebi-Chr584 18452 22720 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi584g00002 1 631 Receptor kinase-like Gene Family AT1G51940 63.509 0.0 773
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Sebi584g00002 PK_Tyr_Ser-Thr 3.7e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi584g00002 - - gmx:100796989 1013.83