Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi583g00032 ATGTGGATCCGAGGATTCAGTGTTTTGATCTTGGGTTGCATTTTGTTGTCCTTGATATCTGTGATTTCTGGTCTGGAACCCGAACTGGGATGGACCCGCGTTGTCTTTCAGACAAATTATGGGGATATTGAATTTGGTTTCTTTCCAACTGTTGCACCCAAAACTGTTGAGCACATTTTTAAACTTGTGCGACTTGGAGGCTATAACACTAATCATTTCTTTCGGGTGGACAAGGGATTTGTTGCCCAAGTAGCAGATGTTAAGGGTGGAAGATCTGCTCCCATGAATGAGGAACAAAGAAGAGAAGCTGAAAAGACTGTTGTTGGTGAATTTAGCGAAGTCAAACATGTTCGGGGTATTCTTTCTATGGGAAGGTATGATGATCCAGACAGTGGTTCATCCTCATTTTCAATACTACTTGGAAATGCTCCTCATCTTGATGGCAAGTATGCAATATTTGGAAGAGTTACTAAAGGCGACGATACATTGACAAAGCTTGAGCAACTACCTACCCGTAGAGAGGGTATATTTGTAATGCCAACAGAACGCATCACTATCCTCTCATCATATTACTATGACACGGAGACAGAAAATTGTGAGCAAGACAGATCTATTTTGAAGCGCAGGTTAGCTGCATCTGCTGTTGAAGTTGAAAGACAGAGAATGAAATGCTTTCCCTGA 681 0.417 MWIRGFSVLILGCILLSLISVISGLEPELGWTRVVFQTNYGDIEFGFFPTVAPKTVEHIFKLVRLGGYNTNHFFRVDKGFVAQVADVKGGRSAPMNEEQRREAEKTVVGEFSEVKHVRGILSMGRYDDPDSGSSSFSILLGNAPHLDGKYAIFGRVTKGDDTLTKLEQLPTRREGIFVMPTERITILSSYYYDTETENCEQDRSILKRRLAASAVEVERQRMKCFP 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi583g00032 226 Gene3D - 26 199 IPR029000 -
Sebi583g00032 226 CDD cyclophilin 35 188 - -
Sebi583g00032 226 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 34 188 IPR002130 GO:0000413|GO:0003755
Sebi583g00032 226 SUPERFAMILY Cyclophilin-like 30 193 IPR029000 -
Sebi583g00032 226 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP23 14 226 IPR044233 -
Sebi583g00032 226 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 35 191 IPR002130 GO:0000413|GO:0003755
Sebi583g00032 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 47 62 IPR002130 GO:0000413|GO:0003755
Sebi583g00032 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 119 134 IPR002130 GO:0000413|GO:0003755
Sebi583g00032 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 148 163 IPR002130 GO:0000413|GO:0003755
Sebi583g00032 226 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 73 85 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi583g00032 Sebi-Chr583 594122 598850 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi583g00032 34 192 U-box Gene Family AT5G67530 29.940 9.93e-12 62.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi583g00032 - - gmx:100819238 400.979