Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi583g00030 ATGGCTTTTTTCCAAGCAAACTTCATGCTACAAACCCCTCACCATAATGATCATCAACCTCCACCTTCACTCAACTCAATTCTACCCACGTGTACACCTCAAGATTATCATGGGGGACCATCCTTTCTAGGGAAGAGATCTATGTCATTTTCATCAGGAATTGAACTTGGAGAAGAAGCTAATGCTGAGGAAGATTTGTCTGATGATGGATCACAAGCAGGGGAGAAAAAAAGGAGGCTTAACATGGAACAAGTGAAGACACTTGAGAAGAGCTTTGAGTTGGGAAATAAGCTTGAACCAGAGAGGAAAATGCAGCTTGCAAGAGCTCTTGGATTGCAGCCTAGACAGATTGCTATATGGTTCCAAAACAGAAGGGCTAGGTGGAAGACCAAGCAGTTGGAGAAAGACTATGATGTCCTTAAAAAACAATATGAAGCTATTAAGTCAGATAATGATGCACTTCAAGCTCAGAACCAAAAACTTCAGGCAGAGATATTGGCACTGAAAAATAGAGAGCCAACTGAATCTATCAACCTTAATAAAGAAACAGAAGGGTCCTGCAGCAACAGAAGTGAGAACAGCTCAGACAACATCAAGTTGGATATCTCAAGGACACCAGCTATAGATAGTCCTTTATCTACACATCACCACAGCAGAACCTTCTTTCCACCCTCTGCTAGGCCTACAACAGTTGCTCAGCTTTTTCAAACTTCCTCAAGGCCAGATCACCAATGCCAAAAGATGATCAACTGGTCAAAGAAGAAACCTTAA 771 0.4189 MAFFQANFMLQTPHHNDHQPPPSLNSILPTCTPQDYHGGPSFLGKRSMSFSSGIELGEEANAEEDLSDDGSQAGEKKRRLNMEQVKTLEKSFELGNKLEPERKMQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYDVLKKQYEAIKSDNDALQAQNQKLQAEILALKNREPTESINLNKETEGSCSNRSENSSDNIKLDISRTPAIDSPLSTHHHSRTFFPPSARPTTVAQLFQTSSRPDHQCQKMINWSKKKP 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi583g00030 256 CDD homeodomain 76 132 IPR001356 GO:0003677
Sebi583g00030 256 PRINTS Lambda-repressor HTH signature 102 111 IPR000047 GO:0003677
Sebi583g00030 256 PRINTS Lambda-repressor HTH signature 111 127 IPR000047 GO:0003677
Sebi583g00030 256 Pfam Homeobox associated leucine zipper 131 171 IPR003106 GO:0006355|GO:0043565
Sebi583g00030 256 ProSitePatterns 'Homeobox' domain signature. 106 129 IPR017970 GO:0000981|GO:0006355
Sebi583g00030 256 SUPERFAMILY Homeodomain-like 67 133 IPR009057 -
Sebi583g00030 256 MobiDBLite consensus disorder prediction 237 256 - -
Sebi583g00030 256 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 53 203 IPR045224 GO:0003700
Sebi583g00030 256 MobiDBLite consensus disorder prediction 176 227 - -
Sebi583g00030 256 SMART HOX_1 74 135 IPR001356 GO:0003677
Sebi583g00030 256 FunFam Homeobox-leucine zipper protein ATHB-13 68 135 - -
Sebi583g00030 256 MobiDBLite consensus disorder prediction 59 78 - -
Sebi583g00030 256 Gene3D - 68 137 - -
Sebi583g00030 256 Pfam Homeodomain 76 129 IPR001356 GO:0003677
Sebi583g00030 256 MobiDBLite consensus disorder prediction 179 227 - -
Sebi583g00030 256 Coils Coil 123 171 - -
Sebi583g00030 256 ProSiteProfiles 'Homeobox' domain profile. 71 131 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi583g00030 Sebi-Chr583 537220 538526 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi583g00030 1 239 Homeobox Transcription Factor Family AT1G69780 67.589 1.01e-109 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Sebi583g00030 Homeodomain 1.2e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi583g00030 K09338 - gmx:100814080 435.647