Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi583g00027 ATGGGTAACTGCCTAGATTCTTCTGCAAAAGTTGATGCAGCTCAAAGCTCCAGATCCACTTCTGGAATCTCAAAAACCACTCCTTCCAGCTTATCTATTCCATCATACAGTGAAAAAAGCAATGCCTCAACTCTTCCCACACCAAGGTCTGAGGGTGAGATCTTGTCTTCTCCCAATCTCAAGCCCTTCACATTCAATGAACTGAAGAATGCCACCAGAAATTTTCGTCCTGATAGTCTTCTTGGTGAAGGGGGATTTGGTCATGTTTATAAGGGATGGATAGATGAACACACATTTACAGCTTCAAAACCTGGATCAGGAATGGTTGTTGCTGTAAAGAGGCTTAAGCCTGAAGGTTTTCAAGGTCATAAGGAGTGGTTGACTGAGGTTAACTACCTTGGACAACTGCACCATCCTAATCTAGTTAAATTAATTGGGTACTGCTTGGAGGGAGATAATCGGCTATTGGTCTATGAGTTTATGCCCAAAGGGAGCTTAGAGAACCATCTGTTTAGAAGTCGGTTAACAGCCAAAAGTGATGTATACAGTTTTGGGGTTGTGTTGCTTGAACTTTTGTCTGGAAGACGAGCTGTTGATAAAACAATAACTGGTTTGGAGCAGAATCTGGTGGACTGGGCAAAACCATATTTGGGCGATAAACGAAGACTATTCCGGATAATGGATTCCAAATTGGAAGGCCAATACCCACAAAAAGGAGCCTTCATGGCTGCTACACTTGCTCTACAATGCCTTAACAGTGAAGCCAAGGCAAGGCCTCCAATGACAGAGGTGTTAGCAACTCTGGAACAGATAGAAGCCCCTAAAAGTGCAGGCAGGAATTCCCTATCAGAACATCAGAGAATCCACACTCCTGTAAGAAGGTCTCCAGCGCGAAACAGGACCCCTTTAAGTCTAACTCCTACTGCATCCCCTCTGCCATCTCACCGGCAATCCCCTCGTGTCAGTGTGCACTAA 975 0.4462 MGNCLDSSAKVDAAQSSRSTSGISKTTPSSLSIPSYSEKSNASTLPTPRSEGEILSSPNLKPFTFNELKNATRNFRPDSLLGEGGFGHVYKGWIDEHTFTASKPGSGMVVAVKRLKPEGFQGHKEWLTEVNYLGQLHHPNLVKLIGYCLEGDNRLLVYEFMPKGSLENHLFRSRLTAKSDVYSFGVVLLELLSGRRAVDKTITGLEQNLVDWAKPYLGDKRRLFRIMDSKLEGQYPQKGAFMAATLALQCLNSEAKARPPMTEVLATLEQIEAPKSAGRNSLSEHQRIHTPVRRSPARNRTPLSLTPTASPLPSHRQSPRVSVH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi583g00027 324 Gene3D Phosphorylase Kinase; domain 1 51 159 - -
Sebi583g00027 324 MobiDBLite consensus disorder prediction 275 324 - -
Sebi583g00027 324 SUPERFAMILY Protein kinase-like (PK-like) 47 268 IPR011009 -
Sebi583g00027 324 MobiDBLite consensus disorder prediction 297 324 - -
Sebi583g00027 324 MobiDBLite consensus disorder prediction 1 58 - -
Sebi583g00027 324 FunFam Serine/threonine-protein kinase BIK1 42 160 - -
Sebi583g00027 324 Gene3D Transferase(Phosphotransferase) domain 1 160 292 - -
Sebi583g00027 324 ProSiteProfiles Protein kinase domain profile. 75 324 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi583g00027 324 PANTHER OS01G0588500 PROTEIN-RELATED 36 172 - -
Sebi583g00027 324 ProSitePatterns Protein kinases ATP-binding region signature. 81 113 IPR017441 GO:0005524
Sebi583g00027 324 Pfam Protein tyrosine and serine/threonine kinase 79 172 IPR001245 GO:0004672|GO:0006468
Sebi583g00027 324 MobiDBLite consensus disorder prediction 9 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi583g00027 Sebi-Chr583 468035 471109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi583g00027 174 268 Glycoside Hydrolase AT3G07070 49.474 8.45e-23 96.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Sebi583g00027 PK_Tyr_Ser-Thr 5.5e-17 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi583g00027 - - gmx:100809778 340.887