LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi583g00025	ATGGGGAAAGGAAGAAGTCCTGGGAAATGGTTTAAGAACTTAATCTTGGGGAAGAAATCATCATCGAAGTCCAATTCATCAAAGAAGAATGATATTTTTAAACCTTCAAGTAACAAGGATGTGCTGGGGTTTTCTGAGGTATCCGTGCCTGATCCAACTGTGGATTCTTTGCTGATATCCCCACCAATATCTGGAGCTAATGCTACTAAAGAAGCCCTTCCAGAAAAAGAAGTAGTTAGTAGGCCATCACAGGACAGGGATATTCTTCCAAATGGAGATAAAGAGGCTCATGCTCAAGCTATTGCTAATTTTGGATCTCAAGAGGATCCTGAGAAACTCAGGCTTACAGAAGCAGCTATAAAAGTTCAGGCTGCTTCTAGAGGCTATCTGGCTCGTCGGGAATTTCAAACACTCAAAGGTGTCATACAACTGCAAGCTATTATTCGTGGCCACTTGGTTAGAAGACAAGCTGTTTCTGCTTTATACTGTGTGAAAGGAATTGTTAAATTTCAAGCATTGGCTCGTGGTTACAATGTTAGGCGTTCTACTATTGGGCGTGAAGTCCTGAAAATTCGCAAGGATACTCAATGTTCAAATTCTATTGGGGTTGTTACATCCACACAGGCAGAGAAGCTGTCAGAAAATGGCTTTGTTCACAAGCTTTTGGCTTCCTCATCCTATTCACTTCCTTTATCCCTCAATGGTGAACTTGGGGAACCTAACTTGGCTTGGAAGTGGCTTGACCGCTGGACAAGGTCACACTTTTGGTCACCTCTTCCTAAATTGAAGAAGAAACATGATTCAGTGTCTGATGAAAAAGATAGGAGTTGTCAAACAGTTGAAAAGGGACAAGTTAAAAGAAATACCCGGAAATCTCCTGTTGTGAAAGCTGATGATGGCTCAATTCCAGATGTTTCCGAGCAGGGCCCAAAGGCCTCTTCAGAGAAAATGAAAGATTCAACAGTGCCAAAGTCAAAAGAGGCTGATCCTGAGAAAGGTCTTGAACAGCAAGCAAAAGAAGAGAATGATAATAAGCCACATAATGATCCTATTGCTGTCTTGCAGACTAGTGTGGAGAATGATGGAGATGAAAAAATTCAAAGACTTTGTGAAGACTTGAATGATGGTGACAAAATTATCAGCAACAACTGCCAAAGAAGAGCTTCACTGCCTGCTAATTTTAATGATCAAGATAATGAGTTACATAACACTCCAAGACTGCCCAGTTATATGGCTCCTACTGAATCTGCAAAAGCTAAGCTAAGGGCACAAGGCTCGCCAAGATTAGCTACTGATTTGGTAGACAAAAACAGTATAACCAGGCGGCATTCACTTTCATCTTCGCTTAATGGCAAGTCAGGTTCATTTTCCCCAAGAGCAGAAAGATTGATAGCCATGAGTGGCAGAGGAGTGCTAAAGACTGATAGATCTCTGTCATCTTCAAGGGATGGGACTGGTACGGTACCTGGTAAGGGAATTTTTTAA	1485	0.4168	MGKGRSPGKWFKNLILGKKSSSKSNSSKKNDIFKPSSNKDVLGFSEVSVPDPTVDSLLISPPISGANATKEALPEKEVVSRPSQDRDILPNGDKEAHAQAIANFGSQEDPEKLRLTEAAIKVQAASRGYLARREFQTLKGVIQLQAIIRGHLVRRQAVSALYCVKGIVKFQALARGYNVRRSTIGREVLKIRKDTQCSNSIGVVTSTQAEKLSENGFVHKLLASSSYSLPLSLNGELGEPNLAWKWLDRWTRSHFWSPLPKLKKKHDSVSDEKDRSCQTVEKGQVKRNTRKSPVVKADDGSIPDVSEQGPKASSEKMKDSTVPKSKEADPEKGLEQQAKEENDNKPHNDPIAVLQTSVENDGDEKIQRLCEDLNDGDKIISNNCQRRASLPANFNDQDNELHNTPRLPSYMAPTESAKAKLRAQGSPRLATDLVDKNSITRRHSLSSSLNGKSGSFSPRAERLIAMSGRGVLKTDRSLSSSRDGTGTVPGKGIF	494

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi583g00025	494	MobiDBLite	consensus disorder prediction	311	347	-	-
	Sebi583g00025	494	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	109	182	IPR027417	-
	Sebi583g00025	494	PANTHER	IQ-DOMAIN 5-RELATED	1	452	-	-
	Sebi583g00025	494	MobiDBLite	consensus disorder prediction	261	294	-	-
	Sebi583g00025	494	Pfam	Protein of unknown function (DUF4005)	397	472	IPR025064	-
	Sebi583g00025	494	Pfam	IQ calmodulin-binding motif	139	156	IPR000048	GO:0005515
	Sebi583g00025	494	Pfam	IQ calmodulin-binding motif	116	136	IPR000048	GO:0005515
	Sebi583g00025	494	Pfam	IQ calmodulin-binding motif	165	181	IPR000048	GO:0005515
	Sebi583g00025	494	MobiDBLite	consensus disorder prediction	1	39	-	-
	Sebi583g00025	494	MobiDBLite	consensus disorder prediction	442	494	-	-
	Sebi583g00025	494	ProSiteProfiles	IQ motif profile.	139	166	IPR000048	GO:0005515
	Sebi583g00025	494	SMART	iq_5	137	158	IPR000048	GO:0005515
	Sebi583g00025	494	SMART	iq_5	114	136	IPR000048	GO:0005515
	Sebi583g00025	494	SMART	iq_5	162	184	IPR000048	GO:0005515
	Sebi583g00025	494	ProSiteProfiles	IQ motif profile.	115	143	IPR000048	GO:0005515
	Sebi583g00025	494	ProSiteProfiles	IQ motif profile.	165	190	IPR000048	GO:0005515
	Sebi583g00025	494	MobiDBLite	consensus disorder prediction	17	32	-	-
	Sebi583g00025	494	Gene3D	-	113	161	-	-
	Sebi583g00025	494	MobiDBLite	consensus disorder prediction	261	350	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi583g00025	Sebi-Chr583	407146	410370	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi583g00025	4	485	IQD Protein Family	AT1G14380	31.741	2.76e-66	222

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi583g00025	-		-	gmx:100808200	593.964