Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi583g00013 ATGGATTGGAAACAACCCCAAGAAGGAGAAAGATCCAAGGTTATGATGGAATTCGAATCCAACCACTTGTGTAAAATAGAGCGATCCTTCGACGACCGTTACTCTCGCCACGCGCGCGAGTCGCTCGACGAATTGCCTGAGAATTTCACCATCACCGACCCTTCCGTTTCGGGCCACCCAATCGTTTTCGCCAGCCTCGGGTTCCTCAAGATGACGGGGTTCACGCGTGACGAGGTTGTTGGGAGGAGAGGAGGGATGTTTCAGGGGCCAGGAACTTGTAGAAGGTCGGTGATGGAGATTCGAGAGGCCGTTCGCCAAGAGAGAGAGGCTCAAGTCGTTTTGTTGAATTATCGCAAGGACGGCACGCCGTTTTGGATGTTGCTTCGTATTTGCCCTGTTTTTAGTGCTCACGGTGGTGCCGTCGTTCACTTTGTCGCCGTTCAGGTGCCACTTCACCGGAACCCAGAATTGGAGAGTGAAGAGCCGTGTGAGGCAAGTGATGAGGAGAAGAGAAGTGCTGTGATTGCCATGGACAACATCTTTTCTGTGCTAACTTACTACAGCGAGTCGACCGGCAGGCAGATTGTTCCTCACAGAACTAATCCACATTTGCCAGACATGCCTATTGTTTACGCCAGTGATGCCTTCTTGAGATTGACAGGTTATGCAAGGGATGAAGTGTTGGGACGCAACTGTAGATTTTTAGGTGGAGCAGATACTGATACCTCAACTTTACATCTGATAAGCGAAAGCATTAAAACTGAACAACCATGCACAGTACGTATTTTGAATTACAGGTCAATACTTTCATTCACTTTTGTCCGAGCTGCCAAAGCTGTGAACTTTATTTATTCGATGTTTACTGAGTCAATTTACTGCAACACTAGCAGGAAGGATAAAAGCTCATTCTGGAATCTTCTTCATATATCACCTGTTCGGAATGCTTCTGGCAAGGTAGCATACTTTGTGGGAATTCAAATAGAAGACGACTATAAAAACGAGGATAGACAGTGTTGGGGCCCTGATATGAGGCACCTTAGTGTGGTTGGTGTAGTCAAGGTTGCAGTGAGGAGTTTATCAATGACTGCCGGATCGTCAAAGTCATAG 1107 0.4724 MDWKQPQEGERSKVMMEFESNHLCKIERSFDDRYSRHARESLDELPENFTITDPSVSGHPIVFASLGFLKMTGFTRDEVVGRRGGMFQGPGTCRRSVMEIREAVRQEREAQVVLLNYRKDGTPFWMLLRICPVFSAHGGAVVHFVAVQVPLHRNPELESEEPCEASDEEKRSAVIAMDNIFSVLTYYSESTGRQIVPHRTNPHLPDMPIVYASDAFLRLTGYARDEVLGRNCRFLGGADTDTSTLHLISESIKTEQPCTVRILNYRSILSFTFVRAAKAVNFIYSMFTESIYCNTSRKDKSSFWNLLHISPVRNASGKVAYFVGIQIEDDYKNEDRQCWGPDMRHLSVVGVVKVAVRSLSMTAGSSKS 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi583g00013 368 NCBIfam PAS domain S-box protein 61 142 IPR000014 -
Sebi583g00013 368 CDD PAS 205 235 IPR000014 -
Sebi583g00013 368 Gene3D PAS domain 48 194 - -
Sebi583g00013 368 Gene3D PAS domain 287 358 - -
Sebi583g00013 368 Gene3D PAS domain 199 269 - -
Sebi583g00013 368 CDD PAS 61 147 IPR000014 -
Sebi583g00013 368 ProSiteProfiles PAS repeat profile. 34 82 IPR000014 -
Sebi583g00013 368 SMART pac_2 290 332 IPR001610 -
Sebi583g00013 368 SMART pac_2 111 154 IPR001610 -
Sebi583g00013 368 ProSiteProfiles PAS repeat profile. 209 231 IPR000014 -
Sebi583g00013 368 PANTHER PROTEIN TWIN LOV 1 297 358 - -
Sebi583g00013 368 SUPERFAMILY PYP-like sensor domain (PAS domain) 47 146 IPR035965 -
Sebi583g00013 368 Pfam PAS domain 58 148 IPR000014 -
Sebi583g00013 368 Pfam PAS domain 205 326 IPR000014 -
Sebi583g00013 368 SUPERFAMILY PYP-like sensor domain (PAS domain) 205 325 IPR035965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi583g00013 Sebi-Chr583 283396 287348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi583g00013 200 328 AGC Kinase Gene Family AT5G58140 36.434 4.67e-25 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi583g00013 - - gmx:100785562 436.417