Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi583g00009 ATGAGTCGCAAGAGAGACAGACCCGACTTTTCCCGAAACGCTGCCAAGCGCCGCCGCCCCCTGCCAGAGCCCACAGAGGACGAGAGGCCCGCGCCGAGGCCTCCGCCGCCGTCCGCGGTGGTCGTCATGGGCCTCCCTATGGACTGCTCCGTGCTCGATCTCAAGTCCCGATTAGAGATCTACGGCTCCATCTCCCGCATCCGCATCGACCGCGACGCCGTCGGCTACATCACCTACCGAAACAAGGACTCAGCCGACGCCGCCATCGCCGCCGGCCTCGACACTTCCTTCGGAATCACAGTCAACTCCAAAAAGGTTCAGGTTTTGTGGGCTACGGATCCTCTTGCCATGTGGAGGGAAGGAGTTGGTAATAACAAGGATAAAGGGTCTATATCAAAGCTTGTGCGTGCTGAGGTGCCCTTGAGCAGGCATGGAAGAGGCAATAGACTCGCTTCAGCTATTGGGACTACCAAAAGTAATGAGGAAAGTTCAGTTCTAGAAGTGCCTTTCAGGGGCAGAGAAATTGTTGCTTACGATGATATCCTGTAA 549 0.5647 MSRKRDRPDFSRNAAKRRRPLPEPTEDERPAPRPPPPSAVVVMGLPMDCSVLDLKSRLEIYGSISRIRIDRDAVGYITYRNKDSADAAIAAGLDTSFGITVNSKKVQVLWATDPLAMWREGVGNNKDKGSISKLVRAEVPLSRHGRGNRLASAIGTTKSNEESSVLEVPFRGREIVAYDDIL 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi583g00009 182 CDD RRM_SF 44 102 - -
Sebi583g00009 182 SMART rrm1_1 39 109 IPR000504 GO:0003723
Sebi583g00009 182 MobiDBLite consensus disorder prediction 1 38 - -
Sebi583g00009 182 SUPERFAMILY RNA-binding domain, RBD 23 120 IPR035979 GO:0003676
Sebi583g00009 182 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 38 113 IPR000504 GO:0003723
Sebi583g00009 182 Gene3D - 1 115 IPR012677 -
Sebi583g00009 182 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 40 91 IPR000504 GO:0003723
Sebi583g00009 182 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi583g00009 Sebi-Chr583 124868 125755 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi583g00009 1 182 Homeobox Transcription Factor Family AT1G27050 49.268 4.86e-53 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi583g00009 - - ccaj:109806897 282.722