Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi582g00006 ATGGACCCGAAGCTGATATTTGGAGTGCCGGTGTTTATACTCTACATTCTGCTCTCTGGTGTCCCACCCTTCTGGGCAGAGAAAGAGCAGGGTATCTTTGATGCTATTCTTCGTGGACATATTGATTTCGCATCAGATCCTTGGCCTTCCATATCTAGCAGTGCCAAAGACCTGGTCAAGAAGATGCTACGAGCTGACCCTAAAGAACGACTTTCAGCAGTTGAAGTCCTTGATCATCCTTGGATGAAAGAAGATGGAGCATCTGATAAGCCTCTTGATATTGCTGTTTTAACCAGAATGAAACAATTCAGGGCAATGAACAAGCTAAAGAAAGTAGCTCTGAAGGTTATTGCTGAGAATCTTTCTGAAGAAGAGATCATTGGCTTGAAGGAAATGTTCAAATCCATGGACACAGATAACAGTGGAACAATCACTTTTGAAGAGTTGAAAGCTGGTCTCCCCAAACTGGGTACTAAAATTTCCGAGTCTGAAGTAAGGCAGTTGATGGAAGCGGTACATCACAATGGAAGAGTTGGAATCTGCCCTAAAAAGTATAACATGGGTGATGAGAAAACAATAAAGGAGATCATTGCCGAAGTTGATACAGACAATGATGGAAGAATTAACTATGATGAGTTTGTAGCCATGATGAGGAAAGGCAACCCAGACTTGGTAACCAACAGACGTCGCAAATAA 696 0.4224 MDPKLIFGVPVFILYILLSGVPPFWAEKEQGIFDAILRGHIDFASDPWPSISSSAKDLVKKMLRADPKERLSAVEVLDHPWMKEDGASDKPLDIAVLTRMKQFRAMNKLKKVALKVIAENLSEEEIIGLKEMFKSMDTDNSGTITFEELKAGLPKLGTKISESEVRQLMEAVHHNGRVGICPKKYNMGDEKTIKEIIAEVDTDNDGRINYDEFVAMMRKGNPDLVTNRRRK 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi582g00006 231 ProSiteProfiles EF-hand calcium-binding domain profile. 188 223 IPR002048 GO:0005509
Sebi582g00006 231 ProSiteProfiles EF-hand calcium-binding domain profile. 124 159 IPR002048 GO:0005509
Sebi582g00006 231 SMART efh_1 192 220 IPR002048 GO:0005509
Sebi582g00006 231 SMART efh_1 128 156 IPR002048 GO:0005509
Sebi582g00006 231 Gene3D - 183 231 - -
Sebi582g00006 231 Pfam Protein kinase domain 13 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi582g00006 231 SUPERFAMILY Protein kinase-like (PK-like) 13 89 IPR011009 -
Sebi582g00006 231 ProSitePatterns EF-hand calcium-binding domain. 201 213 IPR018247 -
Sebi582g00006 231 ProSiteProfiles Protein kinase domain profile. 1 82 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi582g00006 231 Pfam EF-hand domain pair 129 218 IPR002048 GO:0005509
Sebi582g00006 231 SUPERFAMILY EF-hand 110 219 IPR011992 -
Sebi582g00006 231 CDD EFh 129 218 IPR002048 GO:0005509
Sebi582g00006 231 ProSitePatterns EF-hand calcium-binding domain. 137 149 IPR018247 -
Sebi582g00006 231 Gene3D - 88 181 - -
Sebi582g00006 231 PANTHER SERINE/THREONINE-PROTEIN KINASE 13 211 - -
Sebi582g00006 231 Gene3D Transferase(Phosphotransferase) domain 1 12 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi582g00006 Sebi-Chr582 93159 96328 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi582g00006 13 230 EF-hand Containing Proteins AT4G23650 63.359 1.10e-111 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi582g00006 EF-hand_7 7.4e-13 CL0220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi582g00006 K13412 - gmx:100817321 377.867