Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi581g00036 ATGCAGCAAGAGGATAATCCCTCTAGGCACGAACCAGAAATGGAAAAGGCGCTTGAATCTTGTGACAGTCCAAGAAATAAAAAGATAACAGCTAGATGGGATCCAGAAAGAGCATGTTGGCCTATAATTGATAAAGCACCTGTGTTTCATCCGACTGCTGAGGAGTTTGAAGACACACTTGGTTACATAGCTAAGATACGTCCTATGGCTGAACCTTATGGCATATGTAGGATTGTCCCTCCACCTTTATGGATTCCACCTTGTCCACTTAAGGAGAAAGGTGTATGGGAAACAGCTAAGTTTCCCACTCGCATTCAGCAAATTGATTTGCTTCAGAATAGGGAGCCCATGAGAAAGAAAAGTAGGGGAAGAAAACGAAAACGTAGAAGGCAATCAAAGATGGGCGCATATAGGAAAACTGCCAATTCAGGTTCTGCAGCTAATGTTGCTAATGAACCTGATGAGAAGAAGTTTGGATTCCGATCAGGAAAAGGTAGTGATAATAATCACCTGAAGACAAGGGAGCTCTCTGTGGAGGAAATTGAAGGCGAATACTGGAGAATAATAGAGGAACCAACTGATGAAGTTGAGGTGTATTATGGAGCTGACTTGCAAACTGGAGAACTTCGAAGTGGTTTTCCTAAGGCATCCTCAACTACAGGTGATTCAGATCAGTATGCCCTGTCTGGCTGGAATCTGAATAACTTCGCTCGACTGCCAGGTTCTGCATTAAGTTTTGAAGGAAATGATATCTCAGGAGTTCTAGTTCCATGGCTGTATGTTGGAATATCTTTATACTTTCCTATAAAGACTAACACCGTGTTCTCATTTACTGCTCCTTGGAACAGCATGTTGAAGATCACCACCTGTATTCACTCAATTATCTGCACTGGGGTGACCCAAAAGTATGAGGCTGTGAATGCGGCTCCTTTTGATTGGTTTGTGCATGGTCAGAATGCTGCCGAGCTTTACAGTCTGCAGTGCCGTAAGACATCTCTGTCTCATGATAAGGTGCTATTTGGATCTGCTAAGGAAGCTGTACGAGCCCTTGCAGAGATAACTCTCCATAGAAAAGAAAATCTAAAATATTCAAAATGGAGAAGCGCTTGTGGGAAAGATGGAGTTCTTACCAAGGCAGTTAAGACAAGGATAATGATGGAAAAAGAGAGGCTTGACTGTCTTCCTACTAATTTAAAGACGCTGAAGATGGACAGTGACTTTGATTCAAAGGATGAAAAAGAATGCTTCTCTTGCCTCTATGACTTGCACCTATCCGCTGTTGGTTGCAAGTGCTCTCCCGGCAGTTATTCTTGTCTCAGTCACTCAAATTTGTTTTGCTCATGTGAAATGGACGACAAATTTGTTCTGTTTCGATATACTATGAACGAGCTAAGTACATTGGTTGAAGCATTAGAAGGAGAACCTCGTGCTATTAAAGTGTGGGCAAACATAATCACTGGAATGGCTTCTGCTAATGCTGAGGAGGCTCGCGTGTATGAAAAAGACGTGGAGAGGGCCATGTGCAAAATCAAGAGTTATGAAGAAGGGAAAAGCTCAACTTGTTATGCAGGAATTAATGACAAATCAAATTCAAATGTACCTAGCAGTCATTACAGTTACATTTCTTCAGAGTTGGTCCATTCAGAGTCTCTTCATGAAACTTCTAGTACACCAAATGAGACTATAGATTGTCATAAGGGCAATATGAATGATAAAAAGTTGGTCATGGAGCAGGGAGGTTCTGTGGATCTGAATAGTGATGTTATACCAGGTGAACCTGAAAATTATTTGCCAAATATTGCTGACAGCCATCACAATAAGGGTGTTCAATATGTGGAAAAAGTCTGCTATGCAGAGGCCAGAAAGAAAGATAAAAACATGAAAATGAATCCTGGTGGCATTGCTGTCTTGGAGACAGATTTTTCCCCATGCTCAAGTGATGTTCGAAATACACTTGATGGTTGTAAATTGTTTGGGATAGATCTGAATATGCATTCAGATTCAGGAGAGCAACTCAACAGTGTATTAAAAATGGGAGTTGTAGACACCTCCAATACAAGCATATCTTTGACAAACCGAAGCTTCCTAATTGACAAGTTTAATATTTCTGTTGAATCTGTAAGTTTAGGCTCTGTTTTGTATGGAAAGCTGTGGTGCAGTAAGCATGCAATATATCCAAAAGGATTCAAGAGTCGGGTTAAGTTCTTTAGCATTCTTGATCCAGCAAGCACCTGTAATTATGTTTCTGAAGTCATTGATGCTGGATTTATTGGGCCTCTTTTCAAGGTTACCATGGAAGAACATCCAAATCAGGCCTTTTCAAACACCTCAGTAGATAAGTGCTGGGAAACAGTTTTTGACAGACTAACTCATGAAATCAAGAGGCGAAGGAGTCTAGGTGAACAAGAACTTCCTCCCTTGGAATTTCTGCAAAGCATCAACGGTCATAAAATGTTTGGATTCCTCTCGCCATCCATTATTCAGTCAATTGAAGCTCAAGATCCTGGTCATCAATGTGTAGAGTACTGGAACCACAAAGGAGTTCTTTCTGATTCTTCAGGCAGGGAAATTGATGACAAGTTCACTCATGGTTCAAGTAACTCTCTAGGTAACATCAAAACCAAACTTTTTGGTGTTGATTTGATAAAGCTGGAGGAAGATAACATTGGAGAAAGTTGTCATTCATTTGAAGAGATGAAAGTGATGCTACAAGGATTCTTAAAAAAGGCAAGTCCTGATGAGTTAGTTGCAATGCAGAAGCTATTCAGCTCTGATGCACAATTAACTCAGTGGAGAGTGACATTTGTAAAGCTGATCGAGGAAATCCAGAAGGCTTGTGTTGTGCATAACCAAAATTAG 2859 0.4071 MQQEDNPSRHEPEMEKALESCDSPRNKKITARWDPERACWPIIDKAPVFHPTAEEFEDTLGYIAKIRPMAEPYGICRIVPPPLWIPPCPLKEKGVWETAKFPTRIQQIDLLQNREPMRKKSRGRKRKRRRQSKMGAYRKTANSGSAANVANEPDEKKFGFRSGKGSDNNHLKTRELSVEEIEGEYWRIIEEPTDEVEVYYGADLQTGELRSGFPKASSTTGDSDQYALSGWNLNNFARLPGSALSFEGNDISGVLVPWLYVGISLYFPIKTNTVFSFTAPWNSMLKITTCIHSIICTGVTQKYEAVNAAPFDWFVHGQNAAELYSLQCRKTSLSHDKVLFGSAKEAVRALAEITLHRKENLKYSKWRSACGKDGVLTKAVKTRIMMEKERLDCLPTNLKTLKMDSDFDSKDEKECFSCLYDLHLSAVGCKCSPGSYSCLSHSNLFCSCEMDDKFVLFRYTMNELSTLVEALEGEPRAIKVWANIITGMASANAEEARVYEKDVERAMCKIKSYEEGKSSTCYAGINDKSNSNVPSSHYSYISSELVHSESLHETSSTPNETIDCHKGNMNDKKLVMEQGGSVDLNSDVIPGEPENYLPNIADSHHNKGVQYVEKVCYAEARKKDKNMKMNPGGIAVLETDFSPCSSDVRNTLDGCKLFGIDLNMHSDSGEQLNSVLKMGVVDTSNTSISLTNRSFLIDKFNISVESVSLGSVLYGKLWCSKHAIYPKGFKSRVKFFSILDPASTCNYVSEVIDAGFIGPLFKVTMEEHPNQAFSNTSVDKCWETVFDRLTHEIKRRRSLGEQELPPLEFLQSINGHKMFGFLSPSIIQSIEAQDPGHQCVEYWNHKGVLSDSSGREIDDKFTHGSSNSLGNIKTKLFGVDLIKLEEDNIGESCHSFEEMKVMLQGFLKKASPDELVAMQKLFSSDAQLTQWRVTFVKLIEEIQKACVVHNQN 952
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi581g00036 952 SMART fyrn_3 710 754 IPR003888 GO:0005634
Sebi581g00036 952 Pfam F/Y-rich N-terminus 707 751 IPR003888 GO:0005634
Sebi581g00036 952 MobiDBLite consensus disorder prediction 1 27 - -
Sebi581g00036 952 ProSiteProfiles JmjN domain profile. 46 87 IPR003349 -
Sebi581g00036 952 ProSiteProfiles FYR domain FYRC motif profile. 756 846 IPR003889 GO:0005634
Sebi581g00036 952 Gene3D Cupin 31 267 - -
Sebi581g00036 952 MobiDBLite consensus disorder prediction 118 135 - -
Sebi581g00036 952 Gene3D - 702 840 - -
Sebi581g00036 952 PANTHER LYSINE-SPECIFIC DEMETHYLASE 43 262 - -
Sebi581g00036 952 Pfam C5HC2 zinc finger 415 467 IPR004198 -
Sebi581g00036 952 FunFam Putative lysine-specific demethylase JMJ16 702 840 - -
Sebi581g00036 952 Pfam F/Y rich C-terminus 758 844 IPR003889 GO:0005634
Sebi581g00036 952 ProSiteProfiles FYR domain FYRN motif profile. 696 754 IPR003888 GO:0005634
Sebi581g00036 952 SMART JmjN_1 45 86 IPR003349 -
Sebi581g00036 952 MobiDBLite consensus disorder prediction 111 166 - -
Sebi581g00036 952 Pfam jmjN domain 47 80 IPR003349 -
Sebi581g00036 952 SMART fyrc_3 760 855 IPR003889 GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi581g00036 Sebi-Chr581 349297 355719 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi581g00036 262 943 JUMONJI Transcription Factor Family AT4G20400 36.443 4.69e-115 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Sebi581g00036 FYRC 2.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi581g00036 K11446 - gmx:100814590 957.592