Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi581g00015 ATGTGCCCAGTGTCCTTCAATTATGTGTTAACTGTCCCTTGGAACTCCTCTACTTGCCTTAACTTCCAACCTTTTCCATCTCAAAACCAAACACATACAAGTCTTTGTTGCCAAACTCTGTTATCCCTCTTTGGCATTGCCCTTGCACAAAACCTAAAAAAAAACTCTCTTTTCCATCTCCCTAACCTCCCTACCTCTATCTCATGCCTTCAAAATTTCCAAACCAAGCTCAATTCCCTCTCACTTCCTAATAACCTTTTGTCCTCTTGCTTTGACCCTCTTCAATTTGTGATCACTCCCAACATTTGTGCTCATATTCAGTCCAAGCAAGATTGGCTCAAAAGGGTTGGTCCTGCCCCACTGCTCAACACTGCATGTAAACCAGACCTCAGTGTTCTTGCCAATTGTGGTGCATGTACAGATGAGGGGCTCAAGGTTCTGCAGATTCTCACTGCCATTGATGGTAACACTTCACATTCCAAAGATTGCTTTTACTTCACAATACTTTATATTGTTGGAGTTGTGAATGAGTTTGGCCCTGAAAGCAAAGGTGCTATGTCTTGCATCCTTGAATTGCCTGTTAATTCTGAGAGAAAAAATAGTGGAAATTTGCTAGTCAATGCTGATCCACAGGAAGAAAGGTCTATCCTAAGATTGAGACCAAACACAGGGTCAATTTGGTTCAAGTTTGAGGATCTTGAAAAGGCCACAAACAAATTCTCACCACAGAATTTAATTGGTAGAGGTGGATTTGGGTCTGTTTTCAAGGGGATTCTACATGATGGCACAATGGTTGCTGTTAAAAGGATTGAAGAATCTGATTTTCAAGGAGATGCTGAGTTTTATAATGAAGTGGAGATTATTAGCAACTTGAAGCACCGCAATTTAGTGCCACTAAGAGGGTGTTGTGTGGTTGATGAGGATGATAATCATGAATACAGAAGAAGGTACATTGTTCATGATTATATGCTGAATGGAACACCAACTTTCTTGACCACAGATTGGGTCTGGTCATTGATGAAATCAGGAAACTTAGAAGAAGCTTTGGATGCTTCTATCTTAATAGATGGAAATTCAAATAGAAACATGATGGAGAGATTTTTGCTAGTTGGAATTCTGTCTTCTCATGTAATGGTTGGTTCAAGGCCAACAATTTTGGATGCTTTGAAAATGTTAGAAGGGGATATTGAGGTTCCACCAATTCCAGATAGGCCAATGACTCTTGGGCATTATATGTTTTCCAGTGAAGGGTGA 1254 0.4019 MCPVSFNYVLTVPWNSSTCLNFQPFPSQNQTHTSLCCQTLLSLFGIALAQNLKKNSLFHLPNLPTSISCLQNFQTKLNSLSLPNNLLSSCFDPLQFVITPNICAHIQSKQDWLKRVGPAPLLNTACKPDLSVLANCGACTDEGLKVLQILTAIDGNTSHSKDCFYFTILYIVGVVNEFGPESKGAMSCILELPVNSERKNSGNLLVNADPQEERSILRLRPNTGSIWFKFEDLEKATNKFSPQNLIGRGGFGSVFKGILHDGTMVAVKRIEESDFQGDAEFYNEVEIISNLKHRNLVPLRGCCVVDEDDNHEYRRRYIVHDYMLNGTPTFLTTDWVWSLMKSGNLEEALDASILIDGNSNRNMMERFLLVGILSSHVMVGSRPTILDALKMLEGDIEVPPIPDRPMTLGHYMFSSEG 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi581g00015 417 Pfam Protein tyrosine and serine/threonine kinase 244 327 IPR001245 GO:0004672|GO:0006468
Sebi581g00015 417 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 334 406 - -
Sebi581g00015 417 Pfam SPARK 2 164 IPR043891 -
Sebi581g00015 417 SUPERFAMILY Protein kinase-like (PK-like) 220 327 IPR011009 -
Sebi581g00015 417 FunFam Receptor-like serine/threonine-protein kinase At4g25390 206 322 - -
Sebi581g00015 417 Gene3D Phosphorylase Kinase; domain 1 205 322 - -
Sebi581g00015 417 ProSitePatterns Protein kinases ATP-binding region signature. 246 268 IPR017441 GO:0005524
Sebi581g00015 417 ProSiteProfiles Protein kinase domain profile. 240 417 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi581g00015 Sebi-Chr581 134039 135805 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi581g00015 321 417 Receptor kinase-like Gene Family AT1G11050 58.824 1.19e-29 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Sebi581g00015 SPARK 5.2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi581g00015 - - lja:Lj4g3v2693570.1 509.99