Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi581g00012 ATGGAGAGGTACGAGCTAGTGAAGCAGGTAGGACATGGGGATCACACGGTGGTAAAGGTCATGCGCCATAAACAGACCAAAGAACTTGTTGCCGTCAAATACATCCCACGGGGCAATAAGATTGATGAGAGGCTGAAAAGGGAAATCATAAACCATAGATCCCTTCACCATCCGAATATTATTGCCTTCAAGGAGTTGGTTTTGACTCCAACACACATTGCAATAGTAATGGAGTATGCATCTGGTGGAGATCTGTATGACCATCTTTACAATGTATGCTTATGTGAAAATGAGGTTCGGTATTTCTTTCAGCAGTTAATTTCAGGAGTTAGTTATTGTCATGACATGGAAATATGTCATCGAGATTTGAAGTTGGAGAACACATTATTGGAAGGCAAATGTCTTAAAATTTGTGATTTCGGCTACTCCAAGGTTCAATTTCATGATCTGGCCTTCAAAGAATCATATCTAATTCACTCAAGGGCTAATTCAATGATTGGAACTCCAGCCTATATTGCACCAGAGGTTTTTTCTGGCAAAGAATATGATGGAAAGTTGGCAGATATATGGTCCTGTGGGGTGATACTTTATGTGATGCTGGTGGGATCATTCCCATTTGAGGACCCAGAGGATCGCTGCAATTTAAGAAAAACAATAAAACGAATTATGGATGTTCAATACAAGATCCCAGACGATGTTTACATGTCTCAAGGCTGTAGAAATCTGATATCTCGCATTTTTGTGGCAGATCCAGAAAAGAGAATTACCATGAAGGAAATTAAGTCCCATCCATGGTTTTTAAATAACTTGCCTAAGGAATTGACAGAAGAGGCTCAGACTCTTCAGTACAGATCAAAAGAAAACTCAAGCTCTGCTCAAAGTATAGAAGACATCATGAAAATTATTTACCAGGCCAAAACTCTACCAGCACCTGCTTCCAGTGTTAACCAGGCCAAAACTATGCCTTCAACTTCAGTGGAGAAGGTCAGAAAGGAGGTTGAGGCTCTTCACCCTGATGATGAACACATTGTGGTTCACAATCATGGAGTTTGGCGAATCAAGGGCATTATTCAGTCTGTGGAAATAGAACATCAAGAAGTTCAAGCCTACTTGGAGAAGTCCTTTAGCTCAAAACTTCAATCATGGCCCACCTCAGAGGCCAAGTTGGGTAATTTCATTCACTACATGGCTACATTTGTTTCTGGTTTTGCTGTGGGTTTCACTGCTGTTTGGAAATTAGCACTGATTACCCTCGCTGTAGTCCCTATGATAGCAGTAATCGGAGCCATTCACACCACCACATTGGCCAAGCTATCTAGTAAAATCCAAGAAGCTCTTTCTCAGGCTGGCAACATTGCAGAACAAAAGATTGGCTATAGGAGTGGTTTTACAAAGGGAATGGGATTGGGTGCCACTTACTTTGTTGTTTTCTGCTGTTATGCTCTTTTGCTATGGTATGGAGGCTATCTAGTTAGGCACCACTACACCAGTGGAGGACTTGCCATTGCCACCATGTTTTCTGTTATGATGGGTGGATTGGCTTTAGGCCAGTCTGCACCTATCATGACTGCGTTTACAAAGGCCAGAGTTGCAGCTGCAAAAATCTTCCGTGTGATTGATCACAAGCCGAGTATAGACAAAGAGAGTGAATCAGGTGTGGAGTTAGACACTGTTACAGGATTAGTGGAGCTGAAAAATGTGGACTTTTCATACCCATCAAGGCCAGAGGTTCGGATCCTTAACAATTTCAACTTGAATGTGCCTGCTGGAAAGACCATAGCTTTGGTGGGTAGCAGTGGCTCTGGCAAGAGCACAGTTGTCTCTCTTATTGAGAGATTCTATGATCCTTCTTCAGGACAAGTTTTGCTTGATGGGCATGATGTTAAGACATTGAAGCTTAGGTGGTTGAGACTTGAGACAGCAAATAGGACTAGTGGAATCTTAAGTTGGGAGGCTAAAGGAGAGTTTCAGGGTACTTCAAGGAAGTCCCACGCTCTGGCGTGGGCAATAGTCATGGAGTATGCATCAGGTGGAAATATGTCATCGAGATTTGAAGTTGGAGAACACTTTATTGGAAGGCAAATGTCTTTAAATTTGTGA 2100 0.4219 MERYELVKQVGHGDHTVVKVMRHKQTKELVAVKYIPRGNKIDERLKREIINHRSLHHPNIIAFKELVLTPTHIAIVMEYASGGDLYDHLYNVCLCENEVRYFFQQLISGVSYCHDMEICHRDLKLENTLLEGKCLKICDFGYSKVQFHDLAFKESYLIHSRANSMIGTPAYIAPEVFSGKEYDGKLADIWSCGVILYVMLVGSFPFEDPEDRCNLRKTIKRIMDVQYKIPDDVYMSQGCRNLISRIFVADPEKRITMKEIKSHPWFLNNLPKELTEEAQTLQYRSKENSSSAQSIEDIMKIIYQAKTLPAPASSVNQAKTMPSTSVEKVRKEVEALHPDDEHIVVHNHGVWRIKGIIQSVEIEHQEVQAYLEKSFSSKLQSWPTSEAKLGNFIHYMATFVSGFAVGFTAVWKLALITLAVVPMIAVIGAIHTTTLAKLSSKIQEALSQAGNIAEQKIGYRSGFTKGMGLGATYFVVFCCYALLLWYGGYLVRHHYTSGGLAIATMFSVMMGGLALGQSAPIMTAFTKARVAAAKIFRVIDHKPSIDKESESGVELDTVTGLVELKNVDFSYPSRPEVRILNNFNLNVPAGKTIALVGSSGSGKSTVVSLIERFYDPSSGQVLLDGHDVKTLKLRWLRLETANRTSGILSWEAKGEFQGTSRKSHALAWAIVMEYASGGNMSSRFEVGEHFIGRQMSLNL 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi581g00012 699 SUPERFAMILY Protein kinase-like (PK-like) 1 323 IPR011009 -
Sebi581g00012 699 ProSitePatterns Serine/Threonine protein kinases active-site signature. 118 130 IPR008271 GO:0004672|GO:0006468
Sebi581g00012 699 SMART serkin_6 4 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi581g00012 699 SUPERFAMILY ABC transporter transmembrane region 389 546 IPR036640 GO:0005524|GO:0016020
Sebi581g00012 699 Pfam ABC transporter transmembrane region 388 457 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi581g00012 699 Gene3D Transferase(Phosphotransferase) domain 1 1 344 - -
Sebi581g00012 699 CDD ABC_6TM_Pgp_ABCB1_D1_like 384 535 - -
Sebi581g00012 699 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 389 527 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Sebi581g00012 699 Pfam Protein kinase domain 4 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi581g00012 699 Gene3D - 552 638 IPR027417 -
Sebi581g00012 699 FunFam Serine/threonine-protein kinase SRK2A 80 274 - -
Sebi581g00012 699 ProSiteProfiles Protein kinase domain profile. 4 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi581g00012 699 Gene3D ABC transporter type 1, transmembrane domain 457 551 IPR036640 GO:0005524|GO:0016020
Sebi581g00012 699 Gene3D ABC transporter type 1, transmembrane domain 388 456 IPR036640 GO:0005524|GO:0016020
Sebi581g00012 699 Pfam ABC transporter 580 639 IPR003439 GO:0005524
Sebi581g00012 699 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 553 637 IPR027417 -
Sebi581g00012 699 PANTHER SERINE/THREONINE KINASE 2 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi581g00012 Sebi-Chr581 100627 109496 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi581g00012 388 637 Calmodulin-binding Proteins AT2G36910 76.703 1.52e-132 420
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Sebi581g00012 Pkinase 6.9e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi581g00012 K14498 K05658 gmx:100817829 427.943