Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi581g00007 ATGGCTTCAAGAAAGGTCGATAACCCTCACTCTGGCGACGGTGCTAGTCCCGGGAAAATCTTCATCGGAGGGTTAGCCAAAGATACCACCTTAGACACTTTTGTGAAGTACTTCGAGAAGTATGGAGAGATAACGGACTCCGTTATCATGAAGGACCGACACACGGGTCGACCCAGGGGATTCGGGTTCATCACTTACGCGGACCCTTCCGTCGTTGACGAAGTCATTCAGGAGAACCACATCATTAGCGGCAAGCAGGTTGAGATCAAGAGGACTATTCCGAAGGGTTCATCACAAGCCAATGATTTCAAAACAAAGAAAATTTTTGTCGGTGGTATTCCAACAGCTGTAACTGAAGATGAGCTCAAGAACTTCTTCTCTAAGTATGGGAAGGTCGTGGAACATGAGATAATACGTGACCACACCACGAAACGATCCCGGGGATTTGGGTTTATAGTTTTTGACAATGAAAAGGTTGTTGATAATATTTTGGCTGATGGGAACATGATTGATATGGCTGGTACACAGGTTGAGATCAAGAAAGCTGAGCCAAAGAAATCCTCAAACTCAACATCTCTTCCTCCATTTGCTAGTGACTCTAGGGCACGTTCTTACGGTGATGGTTTTGGTGGATTTGGCGATTCTTATGGAGGTTTTGCTAGTGGTGGTTATGGCCCTGCATCTTATAGGTCACTCGGAGGTTTTGGGGGTAGGCTTGGTGATTATGGTGGATATGGAGGTGATGACTTCAATGGTAGTTTTGGGGGTTATGGTGGTGCTGGTGGCTATGCAGGCTTTCGAGGAGAATCGTCTTTTGGCTACTCTAGTCGCTATGGATCCTACATGGGGGGTCTTGGTGGTGGGTTAGGAGCATATGGACGAGGTGGTGGAGGCTATGGAAGCTATGGTGGTCCAAGCACTGGTGAGGGTTATGAAGGCCCTGGTGCTGCTGGTTATGGTGGGGCAGGAGGAGGGCTGTATGCTAGTAGGGGAAGTTATGGTGGAAATAGTCGTTACCACCCTTATGCAAGATAG 1035 0.4773 MASRKVDNPHSGDGASPGKIFIGGLAKDTTLDTFVKYFEKYGEITDSVIMKDRHTGRPRGFGFITYADPSVVDEVIQENHIISGKQVEIKRTIPKGSSQANDFKTKKIFVGGIPTAVTEDELKNFFSKYGKVVEHEIIRDHTTKRSRGFGFIVFDNEKVVDNILADGNMIDMAGTQVEIKKAEPKKSSNSTSLPPFASDSRARSYGDGFGGFGDSYGGFASGGYGPASYRSLGGFGGRLGDYGGYGGDDFNGSFGGYGGAGGYAGFRGESSFGYSSRYGSYMGGLGGGLGAYGRGGGGYGSYGGPSTGEGYEGPGAAGYGGAGGGLYASRGSYGGNSRYHPYAR 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi581g00007 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 108 168 IPR000504 GO:0003723
Sebi581g00007 344 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 79 IPR000504 GO:0003723
Sebi581g00007 344 FunFam Heterogeneous nuclear ribonucleoprotein 1 99 224 - -
Sebi581g00007 344 FunFam Heterogeneous nuclear ribonucleoprotein 1 17 98 - -
Sebi581g00007 344 SMART rrm1_1 19 90 IPR000504 GO:0003723
Sebi581g00007 344 SMART rrm1_1 107 180 IPR000504 GO:0003723
Sebi581g00007 344 SUPERFAMILY RNA-binding domain, RBD 12 98 IPR035979 GO:0003676
Sebi581g00007 344 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 10 344 - -
Sebi581g00007 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 94 IPR000504 GO:0003723
Sebi581g00007 344 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 106 184 IPR000504 GO:0003723
Sebi581g00007 344 Gene3D - 97 218 IPR012677 -
Sebi581g00007 344 Gene3D - 18 96 IPR012677 -
Sebi581g00007 344 SUPERFAMILY RNA-binding domain, RBD 94 190 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi581g00007 Sebi-Chr581 64216 66121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi581g00007 4 193 Eukaryotic Initiation Factors Gene Family AT1G71770 25.238 3.99e-14 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi581g00007 K12741 - gmx:100801373 398.667