Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi581g00003 ATGGAGATTCACTACAGCCAAAGTTACTCCGAAAGGCGCCCCATTCTCAAGTCAAAGGCTCCCGCTGTTAAATGGGTTAAAGAATGGTCGAGCATTATTGCTGGCAGGGTTCCCCAAGATCTCGTAACAACTGGGGGGAAGTGCATGCTCTTAAAATGGGTATCAGAGGATACCTTAAAGGCCTTGAAAGAAAGGGAAAAGGAGATATCAGTTCCTGAGCCAGAACCAGAGCCAACTACTGAAGTGCTTTTTCTTTGCAGCTATGATGGCTGTGGAAAGACATTCATAGATGCTGGTGCATTGAGGAAGCATTCTCACATCCATGGAGAGAGGCAATATGTTTGTCACTATGAAGGATGTGGAAAGGAGAGAGGGATTTTGTGTGTCCTTATGAAGGTTGTGGCCTTCTCCCTGGATTTCAATTTAAGGTCTCACATGAAAACACATTCACAAGAGAACTATCATATCTGCCCATACCCAGATTGCGGAAAGAGATTTGCCCACGAATACAAGCTGAAGAATCACGTTGCATCTCATCATGAAAAGAATGCATCAGTTGAGGTGATCAAGTACACTCCACCTTCAGAGAAGCAAACAAAAACTACTAAACCTTCTGGAGGGGCATATGGTTCTGCATCATCTGATCGCCCCTATGCATGTCCTTATGAAGGATGTGAAAAAGCTTACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCAGGGCAAATGTCTGATGAAAATGCTTATGCATGTCCTTATGAAGGATGTGAAAAAGCTTACATCCATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCGGGGCACATGTCTGATGAAAATACTGAGCATGCTCAGGTTAATGCTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCATATGGTTCTGCATCATCTGATCGCCCCTATGCATGTCCTTATGAAGGATGTGAAAAAGCTTACATACATGAATACAAGCTTAGACTCCATTTGAAGAGGGAGCATCCAGGGCATATGTCTGATGAAAATACTGAGCATGCTCAGGTTAATGTTGACAATGAAATGGATGAAGCAAGTGACCAAGATGCCTACGGTGGGAAATGGTCAAATGGTAAAATTCAGAAGCAAAGTGGTCCCAAACCAAACCTCAAGTTGCCTCCTTCCAAAATTGCAAAACGCAAAGGGTCCACAGCCACTCTAACTGTAATTAACAAACATTTGCCTATGAAAGATGAAACCTTTGATGAAGAAGATAGCGAAGAAACAGAAGAAGAAGATCGGAATAATGTTGAGGATGGTTGGAGATATGCAGGAGGAAACAATGAAGATGACGATGAAGAAACAGAATATGAAGACTGA 1377 0.4263 MEIHYSQSYSERRPILKSKAPAVKWVKEWSSIIAGRVPQDLVTTGGKCMLLKWVSEDTLKALKEREKEISVPEPEPEPTTEVLFLCSYDGCGKTFIDAGALRKHSHIHGERQYVCHYEGCGKERGILCVLMKVVAFSLDFNLRSHMKTHSQENYHICPYPDCGKRFAHEYKLKNHVASHHEKNASVEVIKYTPPSEKQTKTTKPSGGAYGSASSDRPYACPYEGCEKAYIHEYKLRLHLKREHPGQMSDENAYACPYEGCEKAYIHEYKLRLHLKREHPGHMSDENTEHAQVNADNEMDEASDQDAYGSASSDRPYACPYEGCEKAYIHEYKLRLHLKREHPGHMSDENTEHAQVNVDNEMDEASDQDAYGGKWSNGKIQKQSGPKPNLKLPPSKIAKRKGSTATLTVINKHLPMKDETFDEEDSEETEEEDRNNVEDGWRYAGGNNEDDDEETEYED 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi581g00003 458 ProSitePatterns Zinc finger C2H2 type domain signature. 318 341 IPR013087 -
Sebi581g00003 458 Gene3D Classic Zinc Finger 291 358 - -
Sebi581g00003 458 Gene3D Classic Zinc Finger 191 251 - -
Sebi581g00003 458 FunFam Zinc finger transcription factor YY1 193 253 - -
Sebi581g00003 458 Gene3D Classic Zinc Finger 84 107 - -
Sebi581g00003 458 Gene3D Classic Zinc Finger 252 279 - -
Sebi581g00003 458 SUPERFAMILY beta-beta-alpha zinc fingers 213 241 IPR036236 -
Sebi581g00003 458 SUPERFAMILY beta-beta-alpha zinc fingers 135 181 IPR036236 -
Sebi581g00003 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 155 184 IPR013087 -
Sebi581g00003 458 ProSitePatterns Zinc finger C2H2 type domain signature. 255 278 IPR013087 -
Sebi581g00003 458 FunFam Zinc finger transcription factor YY1 296 358 - -
Sebi581g00003 458 SMART c2h2final6 155 179 IPR013087 -
Sebi581g00003 458 SMART c2h2final6 253 278 IPR013087 -
Sebi581g00003 458 SMART c2h2final6 113 149 IPR013087 -
Sebi581g00003 458 SMART c2h2final6 84 108 IPR013087 -
Sebi581g00003 458 SMART c2h2final6 218 243 IPR013087 -
Sebi581g00003 458 SMART c2h2final6 316 341 IPR013087 -
Sebi581g00003 458 ProSitePatterns Zinc finger C2H2 type domain signature. 220 243 IPR013087 -
Sebi581g00003 458 ProSitePatterns Zinc finger C2H2 type domain signature. 157 180 IPR013087 -
Sebi581g00003 458 FunFam zinc finger transcription factor YY1 152 183 - -
Sebi581g00003 458 SUPERFAMILY beta-beta-alpha zinc fingers 311 339 IPR036236 -
Sebi581g00003 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 316 346 IPR013087 -
Sebi581g00003 458 MobiDBLite consensus disorder prediction 363 458 - -
Sebi581g00003 458 SUPERFAMILY beta-beta-alpha zinc fingers 79 120 IPR036236 -
Sebi581g00003 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 253 283 IPR013087 -
Sebi581g00003 458 Pfam Zinc finger, C2H2 type 155 179 IPR013087 -
Sebi581g00003 458 FunFam zinc finger transcription factor YY1 84 109 - -
Sebi581g00003 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 218 248 IPR013087 -
Sebi581g00003 458 ProSiteProfiles Zinc finger C2H2 type domain profile. 84 113 IPR013087 -
Sebi581g00003 458 ProSitePatterns Zinc finger C2H2 type domain signature. 86 108 IPR013087 -
Sebi581g00003 458 Gene3D Classic Zinc Finger 108 152 - -
Sebi581g00003 458 PANTHER TRANSCRIPTIONAL REPRESSOR PROTEIN YY 36 122 - -
Sebi581g00003 458 MobiDBLite consensus disorder prediction 192 209 - -
Sebi581g00003 458 MobiDBLite consensus disorder prediction 185 215 - -
Sebi581g00003 458 Gene3D Classic Zinc Finger 153 184 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi581g00003 Sebi-Chr581 28079 33302 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi581g00003 7 313 C2H2 Transcription Factor Family AT4G06634 55.927 1.31e-100 304
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Sebi581g00003 zf-C2H2 0.012 CL0361