Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi580g00034 ATGGACTGGAATTTGAAAGCACCTTCTTGGGATATGGTTGATGTGGATGAGGCAACCTTACCCAACATAGAAACAATGGATGAGTCAAGCAGATTTGGAGTTTATAGAGTGAAAGGGGAGTTTTCTGTTGACTTGAAGCTTGGTCAGGTGGGGAATTCTGTCACTGAAACAACACTACCTAAGTTTAAAGAGGCTTCTGCTGCTGCAGTCTCCAAAATGGTATCCTCTCCTTCAGGGTCTTCAAAGAGAGCTAGAGCCATTAACAATGCAACCCTGAGAGTGTCATGCCTTGTGGACGGGTGCAATTCAGATCTTAGTAATTGTAGAGATTATCATAGGCGCCATAAGGTTTGTGAACTCCATTCCAAGACCCCTGAGGTCACAATTGGTGGCCAGAAGCAAAGGTTCTGCCAACAGTGTAGCAGGTTCCATTCGCTGGAGCAATTTGATGAGAGAAAAAGAAGCTGCAGGAAACGTTTAGATGGACACAACCGACGGAGAAGAAAGCCTCAGCCCGAACCTCTCACGCGACCTGGTAGTTTTTTGTCTAATTACCAAGGCACCCAGTTGCTACCCTTCTCAAGTTCCACTGCCATGGTGAACCCTGCTTGGAGTGGTGGACTTGTTGCTTCCTGTGCAGGTGCTAGGCTGCAGAACCACAACCAACACCAACAAGATCTTCTTCTTGGATCTTCTCCAAGTCAAACCAGCTATAAAGAAGGGAAGCAACTCTCATTCTTACATGGTGACAATCCCTCTGTGGCTACACTCAATGATCAAAATCCACATCTTCCAGCTGCTTCTGTGTGCCAGACACTTGTCAGGACTAGCCCTTTGTTAGAAAGTTGTGGGGTGAGAAGCAAAATGTTCTGTGATAGCTTAACAAGTTCAGTCCACGACTCCCCTTGTGCTCTCTCTCTTCTGTCATCATCATCACAGACGCACACACCTGGGAATGGTTTAAATCAAATGGTGCAGCCTCACTCAATGTCAATGTCAATGTCCCTTATGCAGACACCTTTAGGCCTGAGCTTGCATGATAACAGCTTAGAGTCCATGGACAGAGTCTTGGTTCCCAATGGAAGTGACCATTCTTCCTCAATGTATAACATGGGTTCTGATGGATCCCCTCAACTATTTCCCTTTCAATGGGAATAG 1158 0.4603 MDWNLKAPSWDMVDVDEATLPNIETMDESSRFGVYRVKGEFSVDLKLGQVGNSVTETTLPKFKEASAAAVSKMVSSPSGSSKRARAINNATLRVSCLVDGCNSDLSNCRDYHRRHKVCELHSKTPEVTIGGQKQRFCQQCSRFHSLEQFDERKRSCRKRLDGHNRRRRKPQPEPLTRPGSFLSNYQGTQLLPFSSSTAMVNPAWSGGLVASCAGARLQNHNQHQQDLLLGSSPSQTSYKEGKQLSFLHGDNPSVATLNDQNPHLPAASVCQTLVRTSPLLESCGVRSKMFCDSLTSSVHDSPCALSLLSSSSQTHTPGNGLNQMVQPHSMSMSMSLMQTPLGLSLHDNSLESMDRVLVPNGSDHSSSMYNMGSDGSPQLFPFQWE 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi580g00034 385 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 75 366 IPR044817 GO:0003677
Sebi580g00034 385 Pfam SBP domain 96 169 IPR004333 GO:0003677
Sebi580g00034 385 Gene3D - 88 157 IPR036893 GO:0003677|GO:0005634
Sebi580g00034 385 ProSiteProfiles Zinc finger SBP-type profile. 93 170 IPR004333 GO:0003677
Sebi580g00034 385 FunFam Squamosa promoter-binding-like protein 14 87 157 - -
Sebi580g00034 385 MobiDBLite consensus disorder prediction 157 183 - -
Sebi580g00034 385 SUPERFAMILY SBT domain 94 175 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi580g00034 Sebi-Chr580 553596 556038 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi580g00034 1 385 SBP-box Gene Family AT5G50670 41.176 1.41e-75 236
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Sebi580g00034 SBP 3.1e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi580g00034 - - gmx:100787407 495.352