Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi580g00028 ATGGGAAGAGGGAAAGTGAAGCTGAACAAAATTGAGAACCCAACAAGCAGGCAGGTGACCTTCTCAAAGAGGAGGAATGGGTTGATCAAGAAGGCCTCTGAGCTTTCCATCTTATGTGAGGCTGAAGTTGCCCTTGTTCTCTTCTCTTCATCTGGAAAGGGTTACCATTTTGCTAGCCACGACGTGTATAGGACCATTTCGAGGTATCGTTGTCAAGTGGGACTGCCCCAATCAAATATCAATTGCTTAAGAACTGCAGAGACTTGGAGGACTGAAATTGATGAATTAAGGAGATCGGTGGACAACACGCAAGCAAGACTAAAGCATTTAGCAGGAGAGGATCTGTCAACACTAGGCATGAAAGAATTGAATCAACTAGAGCGACAATTGAGTACTGGAATTAAACGCATCAACTCTACCAAGGCATGTATAGAGACCAAAGATTCCTTTTACCTAATTAGATGA 465 0.4323 MGRGKVKLNKIENPTSRQVTFSKRRNGLIKKASELSILCEAEVALVLFSSSGKGYHFASHDVYRTISRYRCQVGLPQSNINCLRTAETWRTEIDELRRSVDNTQARLKHLAGEDLSTLGMKELNQLERQLSTGIKRINSTKACIETKDSFYLIR 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi580g00028 154 Gene3D - 13 83 IPR036879 GO:0003677|GO:0046983
Sebi580g00028 154 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Sebi580g00028 154 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Sebi580g00028 154 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Sebi580g00028 154 ProSiteProfiles K-box domain profile. 86 154 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi580g00028 154 CDD MADS_MEF2_like 2 70 IPR033896 GO:0000977|GO:0045944
Sebi580g00028 154 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Sebi580g00028 154 Coils Coil 86 113 - -
Sebi580g00028 154 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Sebi580g00028 154 SUPERFAMILY SRF-like 2 81 IPR036879 GO:0003677|GO:0046983
Sebi580g00028 154 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Sebi580g00028 154 Pfam K-box region 85 143 IPR002487 GO:0003700|GO:0005634|GO:0006355
Sebi580g00028 154 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 140 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi580g00028 Sebi-Chr580 473148 474262 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi580g00028 1 141 MADS-box Gene Family AT1G24260 47.260 1.69e-37 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Sebi580g00028 K-box 2.7e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi580g00028 K09264 - qsu:112006468 199.519