Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi580g00017 ATGGAATGTAATAAAGATGATGCCTTGCGGGCTAAAGAGCTTGCAGAGAAGTTGTTTTTACAGAGGGATTTTGGTGGTGCAAGAATACTTGCAATGAAGGCTCGAGACTTATACCCCAGTCTTGATGGCCTCCCTCAAATGCTGGCAACCATTGATGTGTATATCTCTGCTGAAAAAAAAGTCAATGGGCAAGTAGATTGGTACAGGGTCCTCGGTGTGCAACCCTTGGCTGATGACGAAACAATTCGAAGAGGGTATAGAAAACTGGCTCTCACTCTGCACCCTGATAAAAATAAATCAGTAGGTGCGGATGGGGCATTTAATCTTATAACACAAGCTTGGAGTTTATTATCTGATAAAGCCAAGAGAGCCAGCTTTGACCAACATTACAATTTATGGGGTATATATCAGGGAGTTCCAGGTGGAAAGGCTTATGTGCCAGCTAATCAGAATGGTTTCTTTAACCTCAATACTGCTAATTGGAAGGACAGAGATCATAGAAGTGCTGCTCATCCCAATCCTATGCCAGCTAGTCAGAATGGTTTCTATAACCTCAATACTGCTAATTGGAAGGACAGAGATCATAGGAATGCTGGTCATCCCAATCCTACTTCAGGATCTCCTTTGTCATTGAAACGGACATTCTGGACTATGTGCAGTTCCTGCAGGACACAGTTTGAGTATGAACTTGTTTATTTCAACCTCCATCTTGTCTGCACCAGCTGCAATAAACCATTTTTTGCTTTTGAGGCCCCACCCCCATCTGCATTCGGAAATGCTTCCTCCACTTCAAGAATTTCTCAGATGAAGCAACATAACTTCAACCCAACCAGAATGGAAAGAAACTACCATGTTTCAGGAAGGACACCAATGTCTGCTGTCAACTCATCACTCGGGTCAGGTCCTTTCTCTATTCCCGGTGGTATTTCCAGTGGACTGACATCAGCTTCTGCTGCTGCTGAATCTCCTGGTTTTTTTAGGATGTCATCCGAGAATTTGAAGAGAAAGCATGAAGATTCACAACCTGTCATGAGGGAGGGGATGCATTTTGTGAAAACTCATGCTGTTGAGAGAGCTTTTGCTGGTTCAGCATATCATGCCTCTTATTTTGGTTCAAATTCTATTCTGAAAGGAGATGGATCAAGGAAAAAAAGGCGCACAGATGAACATAAAGTTGATAGTGATAGAAGGGATATGGAAACTGAGATAGCATCTCAGAAGGATAGTTTTTATACAGGAAGGGTTAATGCTGCTGGAAATTATAAACCTAATGGTATTAGGGATGTATCACAGCTGCAAATGAAGAACCTTTTGATGGAAAAGGCTCGGAATGAGATTCGCAAAAAGCTTGATGAATGGAATGTTGCTGCTGCAGCATCAAGGAATTTAGACAAGTCAAAGAATACTGATACAGAGGTCAGACTGAAGGACAACAAAGGGGCTATAAATGGTGTGGAGAATACACAAGAATTTGTTGATTCTGAGACCATTGACAAAAAGTGTTTGTCTGCTGATTCAGAGGTTGCTGATTCTCTCTCCATGAGTGTTCCAGACCCAGATTTCCATGATTTCGATGGAGACCGTATTGAAAACACTTTTGGGGAAAACCAGGTGTGGGCTGTATATGATGATGATGATGGCATGCCTCGCTACTATGCCTTAATCCATGATGTAATCTCAAAAAGTCCTTTCAAAATGAGGATTAGCTGGCTGAACTCTAAAACCAATGATGAATTGGCCCCAATAAAGTGGGTCAGTTATGGCTTTCCAAAGACCGCTGGAGATTTCCATATAGGCAAGCGTGTAACCTATAGCACTCTCAATTCCTTCTCGCACAGGGTTAAGTGGACAAAAGGTTCAAGAGGGGCTGTCCATATATATCCAAAGGAAGGGGAGGTTTGGGCTCTGTATCGGAACTGGTCCCTTGACTGGAATGAATTTACTGAAGATGAAATCATACACAAATATGACATGGTGGAAGTGCTGGAAGACTATAATGAAGAGCTAGGTGTGAATGTTGCCCCACTTGTCAAGGTTGCAGGTTTCAAGGCAGTATTCTGCCAGAATGCTGATCCAAGAAAAATCAGGAATATTCCAAAGGCGGAGATGTTTCGTTTTTCACACCAGGTACCTTCATACTTGCTTACTGGTGAAGAAGGTCATAATGCTCCTAAAGGTTGCTTGGAGCTTGATCCTGCTGCCACGCCTATGGAACTTCTTCAGGCGACCACTGAAGCTCCAAAGCAAGAAATGGAAATGACAGTTGAAAAGTCTTTAAAAGATGAATTGAGGCACAAGGAGAATTCCAGGGAGAATGGTTTTGTTGAGAGGGGCCAAACAACAAGGGAAGAAGATTCTAAAAACCATGTGGCTGAACTACAGGCGGAGAAGGAAAGTAGGCCTGAGATTTTGTTTGTATATCAACGGAAACGTCTAAAGAAAAAAGGAGCGTGCTATGAAGTGGCAACTGGCAAGTAA 2478 0.4257 MECNKDDALRAKELAEKLFLQRDFGGARILAMKARDLYPSLDGLPQMLATIDVYISAEKKVNGQVDWYRVLGVQPLADDETIRRGYRKLALTLHPDKNKSVGADGAFNLITQAWSLLSDKAKRASFDQHYNLWGIYQGVPGGKAYVPANQNGFFNLNTANWKDRDHRSAAHPNPMPASQNGFYNLNTANWKDRDHRNAGHPNPTSGSPLSLKRTFWTMCSSCRTQFEYELVYFNLHLVCTSCNKPFFAFEAPPPSAFGNASSTSRISQMKQHNFNPTRMERNYHVSGRTPMSAVNSSLGSGPFSIPGGISSGLTSASAAAESPGFFRMSSENLKRKHEDSQPVMREGMHFVKTHAVERAFAGSAYHASYFGSNSILKGDGSRKKRRTDEHKVDSDRRDMETEIASQKDSFYTGRVNAAGNYKPNGIRDVSQLQMKNLLMEKARNEIRKKLDEWNVAAAASRNLDKSKNTDTEVRLKDNKGAINGVENTQEFVDSETIDKKCLSADSEVADSLSMSVPDPDFHDFDGDRIENTFGENQVWAVYDDDDGMPRYYALIHDVISKSPFKMRISWLNSKTNDELAPIKWVSYGFPKTAGDFHIGKRVTYSTLNSFSHRVKWTKGSRGAVHIYPKEGEVWALYRNWSLDWNEFTEDEIIHKYDMVEVLEDYNEELGVNVAPLVKVAGFKAVFCQNADPRKIRNIPKAEMFRFSHQVPSYLLTGEEGHNAPKGCLELDPAATPMELLQATTEAPKQEMEMTVEKSLKDELRHKENSRENGFVERGQTTREEDSKNHVAELQAEKESRPEILFVYQRKRLKKKGACYEVATGK 825
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi580g00017 825 PRINTS DnaJ domain signature 68 86 IPR001623 -
Sebi580g00017 825 PRINTS DnaJ domain signature 102 122 IPR001623 -
Sebi580g00017 825 PRINTS DnaJ domain signature 86 101 IPR001623 -
Sebi580g00017 825 SMART dnaj_3 65 122 IPR001623 -
Sebi580g00017 825 Pfam DnaJ domain 66 127 IPR001623 -
Sebi580g00017 825 Pfam Domain of unknown function (DUF3444) 512 719 IPR024593 -
Sebi580g00017 825 Gene3D DnaJ domain 54 135 IPR036869 -
Sebi580g00017 825 MobiDBLite consensus disorder prediction 376 402 - -
Sebi580g00017 825 SUPERFAMILY Chaperone J-domain 63 154 IPR036869 -
Sebi580g00017 825 ProSitePatterns Nt-dnaJ domain signature. 107 126 IPR018253 -
Sebi580g00017 825 MobiDBLite consensus disorder prediction 378 402 - -
Sebi580g00017 825 ProSiteProfiles dnaJ domain profile. 66 130 IPR001623 -
Sebi580g00017 825 Coils Coil 432 452 - -
Sebi580g00017 825 MobiDBLite consensus disorder prediction 761 795 - -
Sebi580g00017 825 CDD DnaJ 66 119 IPR001623 -
Sebi580g00017 825 PANTHER BNAC03G44070D PROTEIN 1 736 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi580g00017 Sebi-Chr580 333650 336127 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi580g00017 4 132 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 39.259 2.21e-24 103