Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi57g00121 ATGTTCCATTCCATCCCTTTGACACAACACGCAACAACCAACCGTCCGATGTGGTTGATCTTGATGATCCTCCGTTTATATGTTACACTTGGTGGTAAACATCGATTTTCTTCTTTTCCCTTCACTGGCAACACAACCGCAGCCGCAGGAGACCCCAGGCACCATTCTGGTGAGTTCTTACCTCTCTCCCTTAATGCCTCGAGGAGTTGGTTGGGTTCGATGGAGAAGGAGTTGGTGGAATTGTATGAAGCTGCGAAGAAAGCGGCGGATGCGTCCAGCTCCACCGATAGCGAACACGAAGAAAGCCGATGTATTGATGCGCTCGAGCAGCTCAAGAATTTCCCCGTTAATTACAAGATTCTCGTCAACACCCAGGTGGGAAAACATCTCAAAGTTCTCACTAAGCATCCCAGGCAGAAAATTCGGGCTTTTGCTGCTGACCTAATTGAGATATGGAAAGGCATAATTATCAAGGAACAAGCAAAAATAAGAACGGGGGCTCTGATAATAAGGAATGGTACATCAAGGTCAAGCTCAGAAAATATAAAGAAGGTACAAAATGTGGATGTCAAAACTGAGAAAACTGATCGTACAGCAAGTGTCAAAGTGGAAAAGATAGCCAAGGATGAAAAGCCAGTTTCTGGGGCGAAGAAAATGTCATCCAGCTCTGCCACTCCTCCAAAGCTAAAGACTATGATTAAATCTAATGATTCAGTGCGAGACAAAATAAGGGAACTTCTCCATGAGGCTTTATCTAAGGTATCTGGAGAGGCAGATGAAGATGTCATGGATGAAGTTAATGCATGCGACCCTATTCGGGTTGCTGTGACAGTGGAGTCTGTATTATTTGAAAAGTGGGGTCCTTCAAATGGGGCCCAAAAGGTTAAGTATAGATCCTTAATGTTCAACCTTAAGGATCAAAATAACCCAGATTTCCGGAGAAAAGTTCTACTTGGTATTGTTGAACCACAGCGGCTAGTCAACATGAGCACAGCAGAAATGGCTAGTGAGCAAAGGAAACAGCAGATTGAGAAAATCGAAAAGAAAGCTTTGTTTGAATGTGAGCGTGGAGCTCAACCAAAAGCTACAACTGATCAATTTAAGTGTGGTCGGTGTGGCCAAAGGAAGTGCACCTATTATCAAATGCAGACCCGCAGTGCCGATGAACCTATGACAACCTATGTCACTTGTGTTGTTTGCAATAACAGGTGGAAGTTCTGTTAG 1224 0.4404 MFHSIPLTQHATTNRPMWLILMILRLYVTLGGKHRFSSFPFTGNTTAAAGDPRHHSGEFLPLSLNASRSWLGSMEKELVELYEAAKKAADASSSTDSEHEESRCIDALEQLKNFPVNYKILVNTQVGKHLKVLTKHPRQKIRAFAADLIEIWKGIIIKEQAKIRTGALIIRNGTSRSSSENIKKVQNVDVKTEKTDRTASVKVEKIAKDEKPVSGAKKMSSSSATPPKLKTMIKSNDSVRDKIRELLHEALSKVSGEADEDVMDEVNACDPIRVAVTVESVLFEKWGPSNGAQKVKYRSLMFNLKDQNNPDFRRKVLLGIVEPQRLVNMSTAEMASEQRKQQIEKIEKKALFECERGAQPKATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCVVCNNRWKFC 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi57g00121 407 Pfam Transcription factor S-II (TFIIS) 367 405 IPR001222 GO:0003676|GO:0006351|GO:0008270
Sebi57g00121 407 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 85 407 - -
Sebi57g00121 407 Pfam Transcription factor S-II (TFIIS), central domain 236 353 IPR003618 GO:0006351
Sebi57g00121 407 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 75 161 IPR035441 -
Sebi57g00121 407 ProSiteProfiles TFIIS central domain profile. 239 362 IPR003618 GO:0006351
Sebi57g00121 407 SMART TFS2_5 81 158 IPR003617 GO:0005634
Sebi57g00121 407 Pfam TFIIS helical bundle-like domain 107 156 IPR017923 -
Sebi57g00121 407 CDD Zn-ribbon_TFIIS 360 406 - -
Sebi57g00121 407 SMART mid_6 237 345 IPR003618 GO:0006351
Sebi57g00121 407 MobiDBLite consensus disorder prediction 216 230 - -
Sebi57g00121 407 MobiDBLite consensus disorder prediction 210 230 - -
Sebi57g00121 407 SUPERFAMILY Zinc beta-ribbon 346 405 - -
Sebi57g00121 407 SMART Cys4_2 367 406 IPR001222 GO:0003676|GO:0006351|GO:0008270
Sebi57g00121 407 Gene3D - 336 407 - -
Sebi57g00121 407 NCBIfam transcription elongation factor S-II 87 407 IPR006289 GO:0003676|GO:0005634|GO:0006368
Sebi57g00121 407 ProSiteProfiles TFIIS N-terminal domain profile. 80 159 IPR017923 -
Sebi57g00121 407 PIRSF TFIIS 74 407 IPR035100 -
Sebi57g00121 407 CDD TFIIS_I 96 156 - -
Sebi57g00121 407 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 68 166 IPR035441 -
Sebi57g00121 407 ProSiteProfiles Zinc finger TFIIS-type profile. 365 405 IPR001222 GO:0003676|GO:0006351|GO:0008270
Sebi57g00121 407 Gene3D - 216 335 IPR036575 GO:0006351
Sebi57g00121 407 FunFam Probable Transcription elongation factor S-II 336 407 - -
Sebi57g00121 407 Coils Coil 329 349 - -
Sebi57g00121 407 SUPERFAMILY Elongation factor TFIIS domain 2 224 337 IPR036575 GO:0006351
Sebi57g00121 407 ProSitePatterns Zinc finger TFIIS-type signature. 369 404 IPR001222 GO:0003676|GO:0006351|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi57g00121 Sebi-Chr57 2383762 2388104 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Sebi57g00121 TFIIS_M 3.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi57g00121 K03145 - gmx:100811982 516.538