Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi57g00117 ATGGCTTCTGCCTCTGCTGCAGGGTCTTCTTCTTGGTCATCTTCAAATTGGGTCATGGAAAGTGGTGATGTTCCTCATGTTTTGGCTGTTGATGACAACCTCATTGACCGCAAACTTGTTGAGAAACTCCTCAGGAATTCTTCTTGCAAAGTTACAACTGCAGAAAATGGGCCAAGGGCATTGGAGTTCTTGGGCTTAACAAGTGGTGAACAGAATAATGCTAGATCCAAAGTAAATTTAGTTATCACAGACTATTGCATGCCAGGGATGACAGGCTATGAGTTACTCAAGAAAATCAAGGAATCATCTGTAATGAAGGAAGTTCCGGTAGTGATCATGTCATCTGAGAACATACCAACACGGATTAACAAGTGTCTGGAAGAAGGAGCTCAGATGTTCATGTTAAAGCCCCTCAAACAATCTGATGTAAAAAAACTGACCTGTCAGTTAAAGAACTTAGGAAGGTGA 468 0.4167 MASASAAGSSSWSSSNWVMESGDVPHVLAVDDNLIDRKLVEKLLRNSSCKVTTAENGPRALEFLGLTSGEQNNARSKVNLVITDYCMPGMTGYELLKKIKESSVMKEVPVVIMSSENIPTRINKCLEEGAQMFMLKPLKQSDVKKLTCQLKNLGR 155
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi57g00117 155 CDD REC_typeA_ARR 27 146 - -
Sebi57g00117 155 PANTHER TWO-COMPONENT RESPONSE REGULATOR 25 150 IPR045279 GO:0009736
Sebi57g00117 155 SUPERFAMILY CheY-like 25 150 IPR011006 -
Sebi57g00117 155 SMART REC_2 25 147 IPR001789 GO:0000160
Sebi57g00117 155 Pfam Response regulator receiver domain 27 145 IPR001789 GO:0000160
Sebi57g00117 155 FunFam Two-component response regulator ORR5 25 153 - -
Sebi57g00117 155 ProSiteProfiles Response regulatory domain profile. 26 151 IPR001789 GO:0000160
Sebi57g00117 155 Gene3D - 23 153 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi57g00117 Sebi-Chr57 2320085 2321328 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi57g00117 1 152 Response Regulator Gene Family AT3G56380 67.949 2.83e-65 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Sebi57g00117 Response_reg 6e-22 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi57g00117 K14492 - gmx:100499827 261.536