Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi57g00111 ATGGGCGAGAAGGGTCTCAAGTCTGAACTTGAAGAGGCTACAAATTCTAACTCTGGAGTGCTGGTGGATAATTACATGAAACAATATTCCAAAGATGGTAAGGAAGTTAATTTTTCCAACCCTGATGAAAACACAAACACAAAGGGAAAGACTTTCACTTGCAACTTTTGCAATAAAAAGTTCTCTTGTCCACAAGCATTGGGAGGGCACCAAAACGCACATAGACAAGAGCGAGCACTTGCAAAACGTCTTGAATTCCTTGATTCTATTGGTGATTTTGAGCAACCCAACATTCCTCGTTATGGAGGATCCTTCGTTAACAGGGCACTTGATGACTCAATGATACGGAAGCCTTCCTACCTTTGGACCTCAAGTGGATTTAGTTATGGTCATTGTTGGTCTGGGCTTGGAATTATGGGAAGAGATGCAACTCCAATTACAAGGCCCGAAGAAGATGGTAATGCTCCACTTTTCCCAAATGCTACTACCAATTCATTACGTCATGTCATAAACAAACCAACTATGACAACAAGTGATCCACGTCATTCCATGCCGGAAGAAACTTCCAAAGTAGAATCTTCCAATGTTGATTTGGAACTTAAGCTTTAA 609 0.4105 MGEKGLKSELEEATNSNSGVLVDNYMKQYSKDGKEVNFSNPDENTNTKGKTFTCNFCNKKFSCPQALGGHQNAHRQERALAKRLEFLDSIGDFEQPNIPRYGGSFVNRALDDSMIRKPSYLWTSSGFSYGHCWSGLGIMGRDATPITRPEEDGNAPLFPNATTNSLRHVINKPTMTTSDPRHSMPEETSKVESSNVDLELKL 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi57g00111 202 Gene3D Classic Zinc Finger 28 90 - -
Sebi57g00111 202 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 22 202 IPR044246 GO:0009788
Sebi57g00111 202 MobiDBLite consensus disorder prediction 172 202 - -
Sebi57g00111 202 ProSitePatterns Zinc finger C2H2 type domain signature. 54 74 IPR013087 -
Sebi57g00111 202 SUPERFAMILY beta-beta-alpha zinc fingers 48 79 IPR036236 -
Sebi57g00111 202 MobiDBLite consensus disorder prediction 183 202 - -
Sebi57g00111 202 ProSiteProfiles Zinc finger C2H2 type domain profile. 52 79 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi57g00111 Sebi-Chr57 2228095 2228703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi57g00111 44 143 C2H2 Transcription Factor Family AT5G10970 39.815 4.22e-15 70.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi57g00111 - - aprc:113850616 133.265