Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi57g00080 ATGGGAACTGTTAGTAACATTGGTTTTCCTTCACTACTCAGAGTTCCTTTGGACACGAAGTTGCAGAGGAACCATAAATCGCCAAGCAGTTTTATGGTTCCTCCTAACTACTCTGTCAGGCTGAGCCAAATTTGTTGTAAACTATCAGAAAGTGGGATTGAGGAGAACCCCACTAGCAAGAGGGCCTCTAAATCCAAGGACAGGATGGAAGAATACAATATTGCTATGAAGAGGATGACGAGGAACCCTTACGAGTATCACCACGATCTGGGTATGAATTACACACTTATAACTGACTATTTGATTGTGGGCTCCCAACCACAGAAACCTGAAGATGCAGATCACCTCAAAAAGGAAGAAGGGGTGGCATACATTCTAAACTTGCAACATGATAAAGATGTTGAATATTGGGGAGTAGACTTGAAGTCAATAATTAGAAGGTGTCGGAAACTTGAAATTACCCACATGAGGAGGCCGGCAATAGACTTTGATCCAAATTCCTTGCGAAGAGAACTACCTAAAGCGGTCTCATCCTTGGATTGGGCAATTTCTGAGGGAAAAGGAAGAGTTTATGTTCATTGTACTGCTGGACTTGGAAGAGCTCCGGCAGTGGCAATTGCATATTTGTTCTGGTTTCGTGGCATGAATCTAAATACAGCATATGATATGCTAACTTCAAAGAGACCTTGTGGACCAAATAAAAAAGCAATACGCGGAGCTACTTATGATTTGGCCAAGGATGATCCATGGAAGGAGCCATTTGAGAGTCTTTCAGAACATGTTTTTGAGGATGTAGCAGACTGGGAGAGGAACTTGATTCAAAATCGTGTCCGTTCCCTTCGTGGAACCTGA 852 0.4272 MGTVSNIGFPSLLRVPLDTKLQRNHKSPSSFMVPPNYSVRLSQICCKLSESGIEENPTSKRASKSKDRMEEYNIAMKRMTRNPYEYHHDLGMNYTLITDYLIVGSQPQKPEDADHLKKEEGVAYILNLQHDKDVEYWGVDLKSIIRRCRKLEITHMRRPAIDFDPNSLRRELPKAVSSLDWAISEGKGRVYVHCTAGLGRAPAVAIAYLFWFRGMNLNTAYDMLTSKRPCGPNKKAIRGATYDLAKDDPWKEPFESLSEHVFEDVADWERNLIQNRVRSLRGT 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi57g00080 283 Pfam Dual specificity phosphatase, catalytic domain 114 233 IPR000340 GO:0008138|GO:0016311
Sebi57g00080 283 Gene3D Protein tyrosine phosphatase superfamily 76 283 IPR029021 -
Sebi57g00080 283 SMART dsp_5 93 235 IPR020422 GO:0006470|GO:0008138
Sebi57g00080 283 ProSiteProfiles Dual specificity protein phosphatase domain profile. 93 250 IPR020422 GO:0006470|GO:0008138
Sebi57g00080 283 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 170 229 IPR000387 GO:0016311|GO:0016791
Sebi57g00080 283 PANTHER DUAL SPECIFICITY PHOSPHATASE, SUBGROUP, CATALYTIC DOMAIN 42 253 - -
Sebi57g00080 283 FunFam Phosphoglucan phosphatase LSF2, chloroplastic 76 283 - -
Sebi57g00080 283 CDD DSP_laforin-like 92 239 IPR045204 GO:0019203
Sebi57g00080 283 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 90 235 IPR029021 -
Sebi57g00080 283 Coils Coil 62 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi57g00080 Sebi-Chr57 1447626 1449594 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi57g00080 24 283 Protein tyrosine phosphatase (PTP) family AT3G10940 71.264 1.05e-137 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi57g00080 - - gmx:100787079 478.018