Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi57g00070 ATGTCATCAGAATCATCAGTGGTTGTTAAGACTTACTGTTGGTTCTTTTTCAAGTTAATAATTGGTATTTGTTGTTGGAGATTGTTTGCTGTTTATGCTTATGCTTCCCTTGGTGCCTCATTGCTTGGAAACCAGGCTCATGTTTTTACTGTTAGAATTGGGTTGGTGGATGATGTTTCTGTGGATTGGCTTTATGATAACCTGAAGGAGCCTAATATGAAGCTCCTGGATGCATCCTGGTACATGCCGGATGAGCAGAGGAATCCAATTCAAGAATATCAGGCTGCTCACATTCCTATGGCCCTTTTCTTTGGTGTGATTGATATTATGCGATCTCCACCAGAGAAGAAGCTGAAAACTGGGATATTTGAGAACTGGGACGCAAGGCAGGAACCAAATATTGTAGTCTATAATGCAGTCCTTAATGCTTGTGTTAAGCAGAAACAGTGGAAATGGGCTTTTTGGGTTTTACAGCAGTTAAAGAAGCAGGGCCTACAACCTTCTACTGTGACTTATGGCCTAGTTATGGAGAAGTCTTCTATTCCTAACTCATTGACATACAGAGTTCCTGTGAATACATTTTGGAAAGAAAGAAAAACTGATGAGGCTATATCAGGTTTCCAAGAAATGGAAAGACGTGGAATTGTAGGTTGTGTTGCTCTTTATTATGATCTAGCTCGATGCCTATGTGTAGCTGGAAGAGGTCATGAGGCACTAATGCAGATAGATAAGATATGTAAGGTTGGCAATAAACCACTAGTTGTGACCTACACTGGCTTGATGCAAGCGAGTCTAGACTCTGGACACATTCAAGATGAGGCTTATATTTTTGAGAAAATGAAAGAAATTTGTGCTCCCAATCTGGTTACCTGTAACAGAATGCTAAAGCTTACCTGGCGCATGGGATGTTTCAAGTTTTATGGATTTTGGGCCCTACCCTACTGCAGAGGAACATTCCCTTCAAATGCTTGGATTGATTGGGGATTTGGAGGCTGA 996 0.4106 MSSESSVVVKTYCWFFFKLIIGICCWRLFAVYAYASLGASLLGNQAHVFTVRIGLVDDVSVDWLYDNLKEPNMKLLDASWYMPDEQRNPIQEYQAAHIPMALFFGVIDIMRSPPEKKLKTGIFENWDARQEPNIVVYNAVLNACVKQKQWKWAFWVLQQLKKQGLQPSTVTYGLVMEKSSIPNSLTYRVPVNTFWKERKTDEAISGFQEMERRGIVGCVALYYDLARCLCVAGRGHEALMQIDKICKVGNKPLVVTYTGLMQASLDSGHIQDEAYIFEKMKEICAPNLVTCNRMLKLTWRMGCFKFYGFWALPYCRGTFPSNAWIDWGFGG 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi57g00070 331 ProSiteProfiles Rhodanese domain profile. 69 137 IPR001763 -
Sebi57g00070 331 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Sebi57g00070 331 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 183 217 IPR002885 -
Sebi57g00070 331 PANTHER OS01G0674700 PROTEIN 176 304 IPR044645 GO:0009658
Sebi57g00070 331 Pfam PPR repeat 194 215 IPR002885 -
Sebi57g00070 331 Gene3D Tetratricopeptide repeat domain 241 305 IPR011990 GO:0005515
Sebi57g00070 331 Gene3D Tetratricopeptide repeat domain 173 240 IPR011990 GO:0005515
Sebi57g00070 331 Gene3D - 57 166 IPR036873 -
Sebi57g00070 331 Pfam PPR repeat family 132 176 IPR002885 -
Sebi57g00070 331 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 59 140 IPR036873 -
Sebi57g00070 331 Pfam Pentatricopeptide repeat domain 249 297 IPR002885 -
Sebi57g00070 331 NCBIfam pentatricopeptide repeat 135 168 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi57g00070 Sebi-Chr57 1080123 1081216 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi57g00070 59 115 Sulfurtransferasese or Rhodanese AT1G79230 70.000 3.83e-21 90.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi57g00070 - - lja:Lj3g3v3639830.1 320.857