Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi57g00052 ATGGAGTTGGTTGCGAAGCTTCGCCACTTAGACCTCACCGGCGCTGTCATTTTGGATGCGCGAAAACCCTCCATTCGACCGCCACGCATGCTCGCCAGAGGAAACATCAACACTCCTAACACTAATTTAATTTACACCAACACCAATCGATTATTCGCCCCCAAAAGGCCCAATTCTACTTCCGGTCGTTTAACCACTGTGGCCGTTGACGACGACACTTCGCTGGTCGAAAACGACTTCGAGTCTCTCTTTTCTGACCCTGAACCTTCTTCGGTTGATAAACGACGTGTCAACAAACAATCGAATGCCGGTGCTTCCAGCGTTTCATCCGGTGTGAAGTTAGAAAACATCAGCAAAACCTATAAGGGTGTCACTGTGTTGAAGGATGTGAGTTGGGAAGTGAAGAAAGGAGAGAAAGTGGGTTTGGTTGGCGTAAACGGTGCGGGTAAGACGACCCAGATGAGGATTATTGCGGGTCTCGAAGACCCGGATTCGGGAAATGTGATAAAGGCCAAACCCAATATGAAAATTGCGTTTTTGAACCAGGAGTTTGAGGTGTCGCTGAGCAGGACGGTGAAGGAGGAGTTTATGAGTGCGTTCAAAGAGGAAATGGAGGTAGCGGCCAAGTTGGAGAAGGTGCAGAAGGCGCTTGAGGGTGCTGTCAACGATATGGAGTTGATGGGAAGGCTTTTGGATGAGTTTGATTTGCTTCAGAGGCGTGCACAGTCTGTGAACTTGGATGTGGTTGATTCAAAGATAAGTAAATTGATGCCTGAACTTGGGTTTGCTCCTGAGGATTCTGATAGGTTGGTGGCTTCTTTTAGTGGGGGGTGGCAGATGAGGATGTGTCTTGGAAAGATTCTACTTCAGGAGCCAGATTTATTATTGTTAGATGAGCCTACAAATCACCTTGATCTTGACACTATTGAGTGGCTTGAAGAGTATCTTAACAAACAGGATGTGCCAATGGTTATCATTTCCCATGACAGAGCTTTTCTTGATCAGCTGTGTACGAAAATTGTGGAAACTGAAATGGGTGTGTCCAGGACATTTGAGGGAAATTATTCTCAGTTTGTAGTTTCAAAGGCAGCATGGATTGAAGCACAGTATGCTGCATGGGAGAAGCAGCAGAAAGAAATTGAACAGACAAAAGACCTGATAAGTAGGTTAGGTGCTGGAGCAAATTCTGGCCGAGCTTCATCTGCTGAGAAGAAGCTGGAGAGACTTCAGGAAGAGGAACTAGTAGAGAAGCCATTTGAACGAAAACAAATGAAAATCAGGTTCCCTGAGCGTGGAAGGAGTGGAAGATCTGTTGTCACAATTAAGAGCTTGCAATTTGGCTTTGAGGATGAGATACTTCTCAACAAGGCAAATCTTACAATTGAAAGAGGAGAAAAAATTGCCATTCTTGGTCCAAATGGATGTGGCAAGAGTACTTTACTGAAATTGATTATGGGTTTAGAGAAGCCAACTGGGGGTGAAGTGATTATTGGAGAGCATAATGTATTACCTAACTATTTTGAGCAAAATCAGGCTGAGGCACTTGATCTGGACAAGACAGTGCTTCAGACAGTAGAAGAAGCTGCAGAGGACTGGAGGATTGATGATATTAAAGGACTTCTTGGGCGTTGTAATTTTAAATCTGATATGCTTGACCGAAAAGTTTCCCTATTGAGTGGTGGTGAGAAGGCGCGGCTGGCTTTTTGCAAATTCATGGTAAAACCATCAACTCTGCTTGTGTTGGATGAACCAACCAATCACTTGGATATACCTTCTAAAGAAATGCTTGAGGAGGCAATAAATGAATACCAAGGCACTGTTATCACAGTATCTCATGATCGATACTTTATAAAGCAGATAGTTAATAGAGTGATAGAAGTTAAAGATGGTACTTTACAGGATTATGCAGGCGATTACAATATTTCTAACATGTTTGAATCTCAAAAATTGCAGTATTATTTAGAGAAGAATCTTGATGCGAGGGAAAGAGAGCTTGAACGCGAGGCAGATCTTGAGGACAAAGCTCCTAAAGTGAAAGCCAAATCTAAGATGTCGAAGGCTGAGAAAGAAGCACGGAAGAAGCAAAAGATGCAGGCCTTTCAGGCAGCAAAACAGAAGTCTAAAGTTGTGAAAAATTCAAAGAGATGGAATTGA 2154 0.4341 MELVAKLRHLDLTGAVILDARKPSIRPPRMLARGNINTPNTNLIYTNTNRLFAPKRPNSTSGRLTTVAVDDDTSLVENDFESLFSDPEPSSVDKRRVNKQSNAGASSVSSGVKLENISKTYKGVTVLKDVSWEVKKGEKVGLVGVNGAGKTTQMRIIAGLEDPDSGNVIKAKPNMKIAFLNQEFEVSLSRTVKEEFMSAFKEEMEVAAKLEKVQKALEGAVNDMELMGRLLDEFDLLQRRAQSVNLDVVDSKISKLMPELGFAPEDSDRLVASFSGGWQMRMCLGKILLQEPDLLLLDEPTNHLDLDTIEWLEEYLNKQDVPMVIISHDRAFLDQLCTKIVETEMGVSRTFEGNYSQFVVSKAAWIEAQYAAWEKQQKEIEQTKDLISRLGAGANSGRASSAEKKLERLQEEELVEKPFERKQMKIRFPERGRSGRSVVTIKSLQFGFEDEILLNKANLTIERGEKIAILGPNGCGKSTLLKLIMGLEKPTGGEVIIGEHNVLPNYFEQNQAEALDLDKTVLQTVEEAAEDWRIDDIKGLLGRCNFKSDMLDRKVSLLSGGEKARLAFCKFMVKPSTLLVLDEPTNHLDIPSKEMLEEAINEYQGTVITVSHDRYFIKQIVNRVIEVKDGTLQDYAGDYNISNMFESQKLQYYLEKNLDARERELEREADLEDKAPKVKAKSKMSKAEKEARKKQKMQAFQAAKQKSKVVKNSKRWN 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi57g00052 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 358 IPR027417 -
Sebi57g00052 717 MobiDBLite consensus disorder prediction 82 109 - -
Sebi57g00052 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 419 652 IPR027417 -
Sebi57g00052 717 Pfam ABC transporter 341 428 IPR032781 -
Sebi57g00052 717 CDD ABCF_EF-3 112 342 - -
Sebi57g00052 717 ProSitePatterns ABC transporters family signature. 274 288 IPR017871 GO:0005524|GO:0016887
Sebi57g00052 717 Gene3D - 401 668 IPR027417 -
Sebi57g00052 717 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 439 654 IPR003439 GO:0005524
Sebi57g00052 717 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 112 370 IPR003439 GO:0005524
Sebi57g00052 717 Pfam ABC transporter 127 302 IPR003439 GO:0005524
Sebi57g00052 717 Coils Coil 677 706 - -
Sebi57g00052 717 MobiDBLite consensus disorder prediction 665 717 - -
Sebi57g00052 717 SMART AAA_5 136 351 IPR003593 GO:0016887
Sebi57g00052 717 SMART AAA_5 463 631 IPR003593 GO:0016887
Sebi57g00052 717 MobiDBLite consensus disorder prediction 665 697 - -
Sebi57g00052 717 Pfam ABC transporter 454 586 IPR003439 GO:0005524
Sebi57g00052 717 ProSitePatterns ABC transporters family signature. 558 572 IPR017871 GO:0005524|GO:0016887
Sebi57g00052 717 Gene3D - 109 393 IPR027417 -
Sebi57g00052 717 PANTHER ABC TRANSPORTER ATP-BINDING SUBUNIT 111 711 - -
Sebi57g00052 717 FunFam Putative ABC transporter ATP-binding component 113 397 - -
Sebi57g00052 717 FunFam ABC transporter ATP-binding protein 399 676 - -
Sebi57g00052 717 CDD ABCF_EF-3 439 631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi57g00052 Sebi-Chr57 860335 865064 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi57g00052 438 612 Calmodulin-binding Proteins AT2G36910 27.861 3.85e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi57g00052 - - gmx:100796907 1085.86