Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi57g00035 ATGGATTCTGCAAGGAGTTGGTTGCAGAAGTTTCAACCACGAGATAGAATGAGGGCCCCTACGAGGAGGAAGGATGATGTTAATGGCGGAAACGAAGTCTCAAATGAGCCCCTGGATGAAGATGCTCTTTCCAATATCACAAAGCAGAAGGTTGCAGCAGCCAAACAATATATTGAGAACCACTACAAGGAGCAAATGAAGAATCTCCAGGAAAGGAAGGAGCGTCGAATCATCTTAGAAAAGAAGTTAGCTGATGCTGATGTTTCCGAGGAGGATCAAAACAATCTGTTGAAATTTTTAGAGAAAAAGGAAACTGAGTATATGCGTCTTCAGAGGCACAAAATGGACGTTGATGATTTTGAGTTATTGACCATGATTGGAAAAGGTGCATTTGGGGAGGTTAGAGTCTGTAGGGAAAAGACTACAGGTCATGTATATGCGATGAAAAAGCTAAAAAAGTCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGTATAGTCAAACTTTATTGTTCTTTCCAAGATGAAGAGTATCTGTATCTTATTATGGAGTATCTACCGGGCGGGGATATGATGACTCTACTCATGAGAAAGGATACTTTGACCGAAGATGAAGCCCGATTTTATGTAGGAGAAACAGTTCTGGCTATTGAATCTATACACAAACACAATTATATACATAGGGATATTAAGCCCGATAACTTATTACTTGATAGATATGGACATGTGAGACTATCAGATTTTGGACTATGTAAACCATTAGACTGTAGTACACTTGAAGAAGCAGATTTTTCTATTGGCCAAAATGCTAATGGATCTATGCAGAATGAAGAACGTACAGGTCCAAAACGTACACAACAAGAACAACTAGAAAACTGGCAGAAGAACAGAAGGACGCTTGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTCTATTGAAGAAAGGTTATGGAATGGAATGTGATTGGTGA 1026 0.3977 MDSARSWLQKFQPRDRMRAPTRRKDDVNGGNEVSNEPLDEDALSNITKQKVAAAKQYIENHYKEQMKNLQERKERRIILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMDVDDFELLTMIGKGAFGEVRVCREKTTGHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDRYGHVRLSDFGLCKPLDCSTLEEADFSIGQNANGSMQNEERTGPKRTQQEQLENWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDW 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi57g00035 341 SUPERFAMILY Protein kinase-like (PK-like) 101 341 IPR011009 -
Sebi57g00035 341 Pfam Protein kinase domain 121 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi57g00035 341 PANTHER SERINE/THREONINE-PROTEIN KINASE 36 341 - -
Sebi57g00035 341 Gene3D Phosphorylase Kinase; domain 1 110 205 - -
Sebi57g00035 341 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Sebi57g00035 341 MobiDBLite consensus disorder prediction 9 30 - -
Sebi57g00035 341 SMART serkin_6 120 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi57g00035 341 CDD MobB_NDR_LATS-like 54 115 - -
Sebi57g00035 341 FunFam Non-specific serine/threonine protein kinase 91 203 - -
Sebi57g00035 341 FunFam Probable serine/threonine-protein kinase cot-1 203 341 - -
Sebi57g00035 341 Gene3D Transferase(Phosphotransferase) domain 1 206 341 - -
Sebi57g00035 341 ProSiteProfiles Protein kinase domain profile. 120 341 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi57g00035 341 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Sebi57g00035 341 MobiDBLite consensus disorder prediction 281 301 - -
Sebi57g00035 341 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi57g00035 Sebi-Chr57 549955 552483 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi57g00035 1 341 AGC Kinase Gene Family AT1G03920 76.796 0.0 555
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Sebi57g00035 Pkinase 9.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi57g00035 K08790 - gmx:100783286 632.869