Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi57g00010 ATGCTGGAAATCTCAACTTTACCGGAAAATCCCATCGAAAACCCTCAGGTAGGGGAGGGCGGTGCTCCTAGTAGCGAGCCAGTTTCTGATGGGTTCAAAGCAGAGCATGGCGAAGAAGGTGACCGGAATTCCGCCGCGAACCGGTGGCCTCGTGAAGAGACAATGGCTTTGCTCAAGATAAGGTCTGAAATGGACGTTGCTTTTAGAGATACCAGCCCCAAAGCCCCTCTCTGGGAACAAGTCTCAAGGAAATTAGCGGAGCTAGGATATCATAGGAATGCAAAGAAGTGCAGGGAGAAGTTTGAGAACATTTACAAGTACCATAGAAGGACCAAGGAAGGTCGTTGTGGATTGATGAGGGAAGTGATAGAGAGGCAAGAAACTCTACAGAGGAAGTTAATGGAAGTGTTGGACAAGTGTGAAAGAGATCGAATATCGAGGGAGGAAGCATGGAAGGTGGAAGAGTTGGCTCGGATTAAGAAAGAGCGTGAGCTTCTTGCTCAGGAAAGGTCACTCTCTTCTGCAAAAGATGAAGCTGTACTTGCCTTTTTGAAAAAGATAGCAGAAAACTCTGCAGGAACAACGGTGCAGTTACCAGACAAAATATTTCAGTTTCCAAAAGAAGTGCAAGAAAATGCTAATGGGAATATTGGAGGAGAGAAGCAAGAGTGTGGGAATAATAATGTTAACATTGGGAATTTCATTCACATGAGTTCATCAAGATGGCCAAGGGATGAAGTTGAAGCTTTGATAAGGTTAAGGACACAGATGGATGTGCAAGTGCAATCACAAGGGAATGGATCTAAAGGACCTCTTTGGGAGGAAATTTCTACTGCAATGAAAGGACTTGGATATGATCGTAGTGCTAAGAGGTGCAAAGAGAAATGGGAGAATATAAACAAGTACTTCAAGAGGATGAAGGAGAAAAACAAGGTGAAACCTATGGATTCTAAAACTTGTCCTTATTATCACCACCTGGAAGCTTTATACAGTAAAAAGCCTAAGAAGGTGGATGAGTCAGGTGATTCTGGGAATGAATTGAGGCCTGAGGAGCTATTGATGCATATTATGGGGAGTAGTACTACTACTAGTCAAGAAGAGAGACAACAACAGTTAGAATCATCTTCTGAAGATGCTGATAGAGAAAACATGGATCAGAATCAGGGAGATAATGAAGATCAAGATGCAGGGTATCAAATGGTTGCCAATAGTTCTTCCATAGCAATCATGAGTTAA 1236 0.4288 MLEISTLPENPIENPQVGEGGAPSSEPVSDGFKAEHGEEGDRNSAANRWPREETMALLKIRSEMDVAFRDTSPKAPLWEQVSRKLAELGYHRNAKKCREKFENIYKYHRRTKEGRCGLMREVIERQETLQRKLMEVLDKCERDRISREEAWKVEELARIKKERELLAQERSLSSAKDEAVLAFLKKIAENSAGTTVQLPDKIFQFPKEVQENANGNIGGEKQECGNNNVNIGNFIHMSSSRWPRDEVEALIRLRTQMDVQVQSQGNGSKGPLWEEISTAMKGLGYDRSAKRCKEKWENINKYFKRMKEKNKVKPMDSKTCPYYHHLEALYSKKPKKVDESGDSGNELRPEELLMHIMGSSTTTSQEERQQQLESSSEDADRENMDQNQGDNEDQDAGYQMVANSSSIAIMS 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi57g00010 411 PANTHER FI21293P1 118 391 - -
Sebi57g00010 411 FunFam Trihelix transcription factor GT-2 49 110 - -
Sebi57g00010 411 Pfam Myb/SANT-like DNA-binding domain 47 114 IPR044822 -
Sebi57g00010 411 Pfam Myb/SANT-like DNA-binding domain 240 329 IPR044822 -
Sebi57g00010 411 SMART sant 238 302 IPR001005 -
Sebi57g00010 411 SMART sant 45 107 IPR001005 -
Sebi57g00010 411 FunFam Trihelix transcription factor GT-2 242 305 - -
Sebi57g00010 411 MobiDBLite consensus disorder prediction 356 370 - -
Sebi57g00010 411 CDD GT1 240 307 - -
Sebi57g00010 411 ProSiteProfiles Myb-like domain profile. 240 300 IPR001005 -
Sebi57g00010 411 Coils Coil 119 139 - -
Sebi57g00010 411 MobiDBLite consensus disorder prediction 31 50 - -
Sebi57g00010 411 MobiDBLite consensus disorder prediction 356 411 - -
Sebi57g00010 411 Gene3D - 242 305 - -
Sebi57g00010 411 Gene3D - 49 110 - -
Sebi57g00010 411 ProSiteProfiles Myb-like domain profile. 41 105 IPR001005 -
Sebi57g00010 411 MobiDBLite consensus disorder prediction 1 50 - -
Sebi57g00010 411 MobiDBLite consensus disorder prediction 371 388 - -
Sebi57g00010 411 CDD GT1 47 112 - -
Sebi57g00010 411 MobiDBLite consensus disorder prediction 390 411 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi57g00010 Sebi-Chr57 124581 126295 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi57g00010 118 335 Trihelix Transcription Factor Family AT1G76890 48.899 3.57e-65 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Sebi57g00010 Myb_DNA-bind_4 3.5e-21 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi57g00010 - - gmx:100787329 386.726