LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Sebi579g00031	ATGTGCTGCCTTTGCTATCATGTCACTCAGCTTGTCAAGGCAAACACAGTGCGGATTCAAAGTGGATCTTCTCTATCTTGTCAAGGCAAACTCATGAAGATTAAATTGGAGCTAGTTATTGTTGGAGCAGGTTTCAGCTATTCCCTTATTATTCTTCGTTCTTCCTTCTCTTCCATAAATTCAACCGTAGAAAACGAACAACTTGGACTCCAAGATCAACGCATAGTCATGAATTGCGTGGAGGAGCTTCGGAAGAACAATTCGAATCTCACCAACATGCTTTTGCAGCGGGTGAAGAAATACCTTAACGGTAACTCTGAATTGGTAGTGACCGATCACAATTTCATGATCGATGTGCTGCCGCGGGAAACGATGAACAACCTTCATGAAACTGCGAAGTTGATGCTGAACGCTGGGCTTCAGAAAGAGTGCTCCGACGTGTACAGTACTTGGCAGAAGGAATGGTTGGAAGAGTGTCTCATAAATAAATTATTACGGTTGAAAAAGGTGGGATTTCAAGATTACATGATTGGAAGATTGATTAAAACATTCAAAGTCGCTCTCAGGATACTGTTTCCCAGTGAGCGAAGACTCTGCAATCATGTCTTCATGGGATTCTCCTCCACTGCTGATCTCTGTTTCTTAGAGGTTTGTCATGGAGCAGCGATTCAATTGTTGAATTTTGCTGATGAGTTTTTCAGTCTGAGTCCTTCAGCTTGGCATTTGTTTAAAACCCTTGACATGTTTGACACATTGCGTGAAATGATTCCCGAATTCGAATCATTGTTTCCTGATTCGTTGGTCAACGAAGCAAAAAAAGTGGAGAATAGATTGGGAGAAGCAAGTAGGGACATTTTCATGGACTTTGGGTATCTGATTTTTCATACGCCGGATGCGGAGTTTGATGCTTGGGACGATGGCAGGGTTCATCTAATGACCTGCGGTGTCTTGGGCTACCTCGTCAACGCTTTCTGGCTCATTGAATACAAATTGGGAACCTTGTTCGGGGATGAAAGGTTCAAAGAAAACACAGGGCGATACCTTGAACTCTATCATAGAAGCTCATGGAATAAGGTGCTAGACACTTTACATCTGGACAGCAATGAGACAGTGGCGTCCAATGTTGCAGCAGAGTCAATGAAAGAAAAACTCAATTTGTTCAATCTGCACTTTAGGGAGATGTGCAGTGTTCAATCTACATGGCTTGTGTTTGATAAGGAGCTAAGGAATCAAATAATAGTATTTGTGGAAAACTTGTTGTTGCCAGCATATGCAAACTTCATTGGGAGGTTTCATGATGTTCTTGGTAAGCATCCTGATGAGTATATTGAGTATGGAATGTCTGACATTCAAGATCGACTCAACCATTTGTTTCTTAGAAACGAGATGATGAATCAACATTCAATAGTAGCTGAGAGAGAAGGAATAGATTTATGTCATCTATTTGGAGAATGGAACTTCTTCAAGATCATCTTTTACACCGTGGTGAGTTTAAGCATCAGTAGCGTCATGTTATTTTTGGAGAAATGGAAACTTTCGAGGCGTTTCATGCTGAAAGCTCATTCGGGTGTTCTAGTTTTGTTGCTCACCTCTTTCTACTCCTTTGTATCAGACAAAGCTGTGAATGGAAAACCAGACCTATTGACTCTGATTTCTTTTGCAGCGTTTGCTTTAATGTCTTTGTGTTTGTCAAAGCAGATTGAACTTGGGTTTGGAGTGGATCTCCTCAATTTCTTCCTTGGATGCTTAACTGTTCAACTGATGAAAATCAACTTGGTGCTCTCTATAGTTGCAGCCATCCTTTGCCATTCTCTCATGGTTGTTCGTTCCAAATTGGATTCTCAACCAAAAATTGGAACTCGAAGAATGGAAGACCATGTAGCCGTAGAAATTGATGCTGCAGATGGAGGAGAAAGAGGAGCTGATCACAACAGGAATCACTTCCAATCTGATTATAACATTGGTCCCCAACAAATTGAATCAGTTAGAAGAGGAACGGTGGAGAAAGATGACAACAGTAGTGACTTCCAATCTGATTATACCAATGACCGCAGACAAATTCAGTCCTTAAAAAATAGAATGGTGGAAGATGGTTACAATTGGAAAAAATATGAAGAGAAACAAGTGAACAAAAATGTAAATCTGAGAAGCTACTATAAATGCACGAGCCTCAAGTGCCCTAGCCTGTCTCCAATGACATGCCAGATCAATCATTTGCCTCCCACGGCGGTGAGCAATTGGATGGTGATGCAACAACATAAACTCCTAAGTATCAGTATGAAATTTATGCTGAATTTGAGCAGGTTCCATGGAGAATATGCTTTTATTGAAGCTGAGAACAAAGGAGTTGTTTCAAGGAAGAAGCTGGTCGGCTAA	2376	0.4099	MCCLCYHVTQLVKANTVRIQSGSSLSCQGKLMKIKLELVIVGAGFSYSLIILRSSFSSINSTVENEQLGLQDQRIVMNCVEELRKNNSNLTNMLLQRVKKYLNGNSELVVTDHNFMIDVLPRETMNNLHETAKLMLNAGLQKECSDVYSTWQKEWLEECLINKLLRLKKVGFQDYMIGRLIKTFKVALRILFPSERRLCNHVFMGFSSTADLCFLEVCHGAAIQLLNFADEFFSLSPSAWHLFKTLDMFDTLREMIPEFESLFPDSLVNEAKKVENRLGEASRDIFMDFGYLIFHTPDAEFDAWDDGRVHLMTCGVLGYLVNAFWLIEYKLGTLFGDERFKENTGRYLELYHRSSWNKVLDTLHLDSNETVASNVAAESMKEKLNLFNLHFREMCSVQSTWLVFDKELRNQIIVFVENLLLPAYANFIGRFHDVLGKHPDEYIEYGMSDIQDRLNHLFLRNEMMNQHSIVAEREGIDLCHLFGEWNFFKIIFYTVVSLSISSVMLFLEKWKLSRRFMLKAHSGVLVLLLTSFYSFVSDKAVNGKPDLLTLISFAAFALMSLCLSKQIELGFGVDLLNFFLGCLTVQLMKINLVLSIVAAILCHSLMVVRSKLDSQPKIGTRRMEDHVAVEIDAADGGERGADHNRNHFQSDYNIGPQQIESVRRGTVEKDDNSSDFQSDYTNDRRQIQSLKNRMVEDGYNWKKYEEKQVNKNVNLRSYYKCTSLKCPSLSPMTCQINHLPPTAVSNWMVMQQHKLLSISMKFMLNLSRFHGEYAFIEAENKGVVSRKKLVG	791

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Sebi579g00031	791	PANTHER	EXOCYST COMPLEX PROTEIN EXO70	331	458	IPR004140	GO:0000145\|GO:0006887
	Sebi579g00031	791	Gene3D	Exocyst complex component Exo70	67	328	-	-
	Sebi579g00031	791	SMART	WRKY_cls	695	740	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sebi579g00031	791	SUPERFAMILY	Cullin repeat-like	85	458	IPR016159	-
	Sebi579g00031	791	Gene3D	WRKY domain	686	732	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Sebi579g00031	791	Pfam	Exo70 exocyst complex subunit	332	455	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Sebi579g00031	791	Pfam	Exo70 exocyst complex subunit	181	320	IPR046364	GO:0000145\|GO:0005546\|GO:0006887
	Sebi579g00031	791	Gene3D	Exocyst complex component Exo70	329	461	-	-
	Sebi579g00031	791	ProSiteProfiles	WRKY domain profile.	690	727	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sebi579g00031	791	Pfam	WRKY DNA -binding domain	696	728	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Sebi579g00031	791	SUPERFAMILY	WRKY DNA-binding domain	691	728	IPR036576	GO:0003700\|GO:0006355\|GO:0043565

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Sebi579g00031	Sebi-Chr579	586374	589999	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Sebi579g00031	110	458	EXO70 exocyst subunit family	AT5G58430	40.185	1.14e-82	275

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Sebi579g00031		Exo70	1.4e-23	CL0295

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Sebi579g00031	-		K07195	lja:Lj2g3v2364680.2	479.559