Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi579g00013 ATGGCAACTGTCGAGGAGCCTCATGTTGAAAGCTCATATTCTCAACATGACATTGGGAATGTTGGTGCCAATGCCACCCACCATGTAGCCATAGAAATTGATACTGCAAGTAGTTTAGAAGTAGGAGCTGATCATGGCAACGACAGTGAGCTCCAATCTGAATTTAACAATCACTGTCAAGAATTACCCTTATTACGCAAAAGGCATTTTGTCACAACTGTTCCAAATGAGATGTATCTGAGGAATACCTTAGCTTCTTACCGAACAACTGCTAATGCTGCAACACACATACAAGCTGAATTTAGAGAACACACACTGAAGGAGATAAAGGAATTTCAGTTTTCCAATCCAGAGGCTGAAGCACGCAAGATTGTTGCAGCCATGAAGATTCAACATGTCTTTCGTAACTATAAGACAAGGAAGATGACTGAAGCTGCTACTCGCATCCAGCGTAACTTCCGCAAATGGATCTCTAAAGAATCTACCTACACGCGTCAGCAGGCTATTAAAATTCAAGCTGCTTTTCGAGGTTTCCATGTGCGGAAACAATACTCTATAATTCTTTGGTCTATGGGAGTCATTGATAAAACAATCCTGCGCTGCCGTTTTAAGAGAAGAGGCTTTCGTGCGCTCTATGTTAACCTTGTGCAAGAAATGGAAGGTAAGAGGCAGGAAAATAAAGTAGAGGATAAAAGCAAGCCAAAGAACTTGCTATAA 717 0.4142 MATVEEPHVESSYSQHDIGNVGANATHHVAIEIDTASSLEVGADHGNDSELQSEFNNHCQELPLLRKRHFVTTVPNEMYLRNTLASYRTTANAATHIQAEFREHTLKEIKEFQFSNPEAEARKIVAAMKIQHVFRNYKTRKMTEAATRIQRNFRKWISKESTYTRQQAIKIQAAFRGFHVRKQYSIILWSMGVIDKTILRCRFKRRGFRALYVNLVQEMEGKRQENKVEDKSKPKNLL 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi579g00013 238 Pfam IQ calmodulin-binding motif 167 184 IPR000048 GO:0005515
Sebi579g00013 238 Pfam IQ calmodulin-binding motif 143 157 IPR000048 GO:0005515
Sebi579g00013 238 Pfam IQ calmodulin-binding motif 126 141 IPR000048 GO:0005515
Sebi579g00013 238 ProSiteProfiles IQ motif profile. 126 152 IPR000048 GO:0005515
Sebi579g00013 238 ProSiteProfiles IQ motif profile. 164 192 IPR000048 GO:0005515
Sebi579g00013 238 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 63 216 - -
Sebi579g00013 238 Gene3D - 89 141 - -
Sebi579g00013 238 ProSiteProfiles IQ motif profile. 142 170 IPR000048 GO:0005515
Sebi579g00013 238 SMART iq_5 163 185 IPR000048 GO:0005515
Sebi579g00013 238 SMART iq_5 122 144 IPR000048 GO:0005515
Sebi579g00013 238 Gene3D - 142 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi579g00013 Sebi-Chr579 231712 233755 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi579g00013 73 226 CAMTA Transcription Factor Family AT3G16940 51.266 6.31e-37 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi579g00013 K21596 - csin:114277705 176.022