Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi579g00007 ATGGAAGATAGAGTTCGTGAGCCTAGAGCTGAAGCAAGGTGTGGTTGTAGGGCAAGATTTCAAATTCATGTGGACAAGAAGACTGGTCGTTGGTATTGTAATTTGTTTGATGATGAGCACAACCATGATCTGCTAGGCATAGTGCATTGCAGTATGCTTCCTGCGCATAGAAAAATGTCCGACAGTGATGTTATACAAATGAATAACATGATAAAGGTTGGTATTAGGCCACCTAATATATTCAGTACTTTTGCTAGCCAATTGGGTGGGTATGAGAAGATCGTGTTTAGGAAGAAGGGTATGTACAATAACATGACTAAGCAAAGGTGGAAGCTGTGTTCAGATGCTAAAGCAGTTGTGGAGTACCTAGGTGAGCTTAGTTTGCGTGATGGTTTGATGTATTTTGAACACACAGTTGACTCTGATGGTAGGCTTGAACATCTTTTTTGGACTGATGGGATGAGCCAAGTAGATTACAAGTTGTATGGAGATAATGCAAGATTCACCAAAGGGTTTGAAGATTGCATGTTGAGGTACTATGATGTGGGGACTTTTAGGAAGAAGTGGCATGAGTTGGTCTCAAAGTTTGGACTTCAGGAAAATCAGTGGGTGAATGCTTTGTATGAAAAGAGGACAATGTGGGCTACAACTCATTCTCAGGGCAAATTTTTTGCTGGGTTTGGAACAACTTCTAGGTGTGAGGGTTTGCACTCAGAGTTAGTGAAGTTTGTAAATTCCCGGTATAATTTGCGTGATTTTTTACAGCATTTTCAGTGTTGCTTGAGTCATATGCGCTTCAAGGAGAAGGAAGATGATTTTACGTCAGTTCACGGGGACCCAGTAATGCAAACTGATTTGCAAGCAATTGAAAGGTCTACTGCAAGGATATATACAAGGAAGGTATTTTTCATATTTAGGCGGGTGTTGTACAAGGCGTCAATGTTGGTTGTTCGTGGCTACACACAGGCTGTCCGATGCACTATTTTTACAGTTAGTGGGCAGGGTGATAGGTCCTATGAATGTCGCGTGTCGTTCTATGTTTCATCCAATAATTTTAAATGTGGATGTCTAAAAATGGAGTCAAGAGGGTTACCATGTGAGCATATTATAGCTGTGATGGCTCATGTGGGGATGAATGAATTACCTGATTCTCTGAGTGCAAGGAGGGCGTCACTTGTTGGTTTTTACTATGATATTAGTGCTTTCAAAGCAAAAACAATTGACAAATATAATGTTGAGCGTGAGAAACTAGTGGCTGAACTTCGAGAATGTCATGAGGAAAATGTAGGAGAACAAGGAGGTGCTTCAGCTGCTAATGATGTTGGTAATGGGAACCTCAAAAACCCTCAACTTGTAGCCACAAAAGGTAGTGGAGTTACATCATCTTCTTCAGGATTAAGAGTGAGGAGAAAACAAATATGTTCCATCTGCAAACTACCAGGTCACAACAAATTGACCTGTCCTAGGCGTGCTGATCAAGGTGTAGGTAGACAACATGGTACTAGTGATGCTGGTCCATCTGAAGGCGTCTCACGTAATTATCCCTACGAAGAATTTGATGCTGGTTCTTGGGCCTTTGACTGA 1584 0.4141 MEDRVREPRAEARCGCRARFQIHVDKKTGRWYCNLFDDEHNHDLLGIVHCSMLPAHRKMSDSDVIQMNNMIKVGIRPPNIFSTFASQLGGYEKIVFRKKGMYNNMTKQRWKLCSDAKAVVEYLGELSLRDGLMYFEHTVDSDGRLEHLFWTDGMSQVDYKLYGDNARFTKGFEDCMLRYYDVGTFRKKWHELVSKFGLQENQWVNALYEKRTMWATTHSQGKFFAGFGTTSRCEGLHSELVKFVNSRYNLRDFLQHFQCCLSHMRFKEKEDDFTSVHGDPVMQTDLQAIERSTARIYTRKVFFIFRRVLYKASMLVVRGYTQAVRCTIFTVSGQGDRSYECRVSFYVSSNNFKCGCLKMESRGLPCEHIIAVMAHVGMNELPDSLSARRASLVGFYYDISAFKAKTIDKYNVEREKLVAELRECHEENVGEQGGASAANDVGNGNLKNPQLVATKGSGVTSSSSGLRVRRKQICSICKLPGHNKLTCPRRADQGVGRQHGTSDAGPSEGVSRNYPYEEFDAGSWAFD 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi579g00007 527 Pfam FAR1 DNA-binding domain 4 45 IPR004330 -
Sebi579g00007 527 SMART 26again6 352 379 IPR006564 GO:0008270
Sebi579g00007 527 PANTHER OS01G0519700 PROTEIN 3 167 - -
Sebi579g00007 527 MobiDBLite consensus disorder prediction 429 464 - -
Sebi579g00007 527 MobiDBLite consensus disorder prediction 488 514 - -
Sebi579g00007 527 Coils Coil 407 427 - -
Sebi579g00007 527 Pfam SWIM zinc finger 337 376 IPR007527 GO:0008270
Sebi579g00007 527 MobiDBLite consensus disorder prediction 438 464 - -
Sebi579g00007 527 ProSiteProfiles Zinc finger SWIM-type profile. 339 377 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi579g00007 Sebi-Chr579 31464 33525 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi579g00007 SWIM 5.5e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi579g00007 - - tpra:123913749 281.567