Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi579g00003 ATGGCCTCCAACTCGTCGCCATCAGTGGGAGCGTCTACGAAGACCCAATGCATGAACGCAACGACGACCACCACAGAGAGGAGTCAACCATCTTGTTTTGGTTACACATACAAGGCCAAGTGGATACCTTACCAAACTGCAATACTGGTAGCTAAACATATAAATGACTACCTGCGTCCAGGGCTGGCCAACAATGTCAGATTCAAGGACCCTACTGGAAATGTCCACAACATTTTGGTTAATATCCACAGACATATGAGATGGTTCGAAGATGGCGTAAGTCAAATGATGGCATTTTACAACTTACACGAGGAAGTCTACATCTACTACACCTACATTCATAGTGGAAATTTCGACATCAGTATCTGGAAGGCTCAGGGAGAGATTGTGTACCCTATTATTCCAAAAATTGAAGTCATCAACATCCTTAGTGATACTGATTCAGATGAAGAAGAAGTTGCTTCTAGGAATGGCATGTACCTCTGGAAGAAGGTTCTGAGTAAGGCCAATGTTGGAGGAAAACAGGGGCTGGTCCTCCCTGTAAATATTGTGTTAGAGGTGCTAGATGAGGACCAAGAAACAATGCATGTCAAGCCACCTAATGACCATGTCCAACCATGGGTGCTGCTATGGAACACTAAAGTCAGGAAACACTGCAGGTTCGGCCAAGGTTGGTACCAGTTTTGCAGAAAAGAAAAGCTTCAGGCAGGTGACATAATTGAATTCTGGCATTACAGTGGAGAACATTACGTGAGGGTGGTAGTGAAGCGTCTAAATCCGTAG 783 0.4457 MASNSSPSVGASTKTQCMNATTTTTERSQPSCFGYTYKAKWIPYQTAILVAKHINDYLRPGLANNVRFKDPTGNVHNILVNIHRHMRWFEDGVSQMMAFYNLHEEVYIYYTYIHSGNFDISIWKAQGEIVYPIIPKIEVINILSDTDSDEEEVASRNGMYLWKKVLSKANVGGKQGLVLPVNIVLEVLDEDQETMHVKPPNDHVQPWVLLWNTKVRKHCRFGQGWYQFCRKEKLQAGDIIEFWHYSGEHYVRVVVKRLNP 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi579g00003 260 CDD B3_DNA 163 244 IPR003340 GO:0003677
Sebi579g00003 260 ProSiteProfiles B3 DNA-binding domain profile. 162 259 IPR003340 GO:0003677
Sebi579g00003 260 Pfam B3 DNA binding domain 163 246 IPR003340 GO:0003677
Sebi579g00003 260 SUPERFAMILY DNA-binding pseudobarrel domain 158 253 IPR015300 -
Sebi579g00003 260 Gene3D - 158 259 IPR015300 -
Sebi579g00003 260 MobiDBLite consensus disorder prediction 1 22 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi579g00003 Sebi-Chr579 17671 20055 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Sebi579g00003 B3 7.6e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi579g00003 - K10295 lja:Lj0g3v0303189.1 72.0182