Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi578g00018 ATGGAGGTTTATGTTAAGGGCATTGTGACCTCTCCTTATACGGTGACGGTGGCCAAGGACAACCATTGCACCAACATTAGACGTCCTCAAGCTTCATCCTCACACACAACACAGGGATTCTGCAGCTTCTTCCTTACTGGTAACGTTGCCAACAAGCAAAACGTCGACGTGGCCACGTGGAGTTCCCAGATCAACACCAAAGGAGGGCGAGGCAAAGAAAGACCAATGGAAGGAGGTAGAAGAGATCGTTCCCAACTTCTCCATGTTAGGGCTCCGAAGAAGGGTGTGAAAGCTCCCATCGCAGCTGCGAAGAAGAAACCAGAGAAGGTGACGAACCCATTGTTCGAGAAGCGTCCGAAGCAGTTTGGGATTGGAGGTGCGTTGCCACCGAAGAGGGACCTGACACGGTTCGTGAAGTGGCCGAAGACGGTTCAGTTGCAGAGGAAGAAGAGGATCCTGAAGCAGAGGCTGAAGGTGCCACCAGCACTGAACCAGTTCACGAAGACACTGGATAAGAATCTGGCAACGAACCTTTTCAAGATGCTGCTGAAGTACAGGCCTGAGGATAAAGCAGAGAAGAAAGAGAGACTTTTGAAAAGGGCTCAGGCAGAGGCTGATGGCAAACCTGTCGAAGCCAAGAAGCCTATTGTTGTCAAATACGGTCTCAATCACGTTACCTACCTCATTGAGCAGAATAAAGCACAACTTGTTGTGATTGCTCATGATGTTGACCCGATTGAACTGGTTGTCTGGCTTCCGGCATTGTGTAGGAAGATGGAAATTCCCTACTGCATTGTCAAGGGCAAGGCCCGCTTGGGAACGATTGTCCATAAGAAAACTGCTTCAGTTTTGTGCTTGACAACTGTGAAGAATGAAGACAAATTGGAGTTCAGTAGAATCTTAGAGGCTATTAAGGCCAACTTCAACGACAAGTATGATGAATACAGAAAGAAGTGGGGTGGTGGGATTATGGGTTCCAAATCCCAAGCCAAGACCAGAGCCAAGGAAAGGCTCCTTGCCAAGGAAGCAGCCCAAAGAATGTCGTAG 1047 0.4881 MEVYVKGIVTSPYTVTVAKDNHCTNIRRPQASSSHTTQGFCSFFLTGNVANKQNVDVATWSSQINTKGGRGKERPMEGGRRDRSQLLHVRAPKKGVKAPIAAAKKKPEKVTNPLFEKRPKQFGIGGALPPKRDLTRFVKWPKTVQLQRKKRILKQRLKVPPALNQFTKTLDKNLATNLFKMLLKYRPEDKAEKKERLLKRAQAEADGKPVEAKKPIVVKYGLNHVTYLIEQNKAQLVVIAHDVDPIELVVWLPALCRKMEIPYCIVKGKARLGTIVHKKTASVLCLTTVKNEDKLEFSRILEAIKANFNDKYDEYRKKWGGGIMGSKSQAKTRAKERLLAKEAAQRMS 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi578g00018 348 FunFam 60S ribosomal protein L7a 140 323 - -
Sebi578g00018 348 Pfam Ribosomal protein L7Ae/L30e/S12e/Gadd45 family 208 295 IPR004038 -
Sebi578g00018 348 ProSitePatterns Ribosomal protein L7Ae signature. 256 273 IPR004037 GO:0042254|GO:1990904
Sebi578g00018 348 PRINTS Ribosomal protein L7A/RS6 family signature 218 232 IPR018492 -
Sebi578g00018 348 PRINTS Ribosomal protein L7A/RS6 family signature 237 250 IPR018492 -
Sebi578g00018 348 PRINTS Ribosomal protein L7A/RS6 family signature 253 263 IPR018492 -
Sebi578g00018 348 PRINTS Ribosomal protein L7A/RS6 family signature 263 277 IPR018492 -
Sebi578g00018 348 PRINTS Ribosomal protein L7A family signature 275 299 IPR001921 -
Sebi578g00018 348 PRINTS Ribosomal protein L7A family signature 307 327 IPR001921 -
Sebi578g00018 348 PRINTS Ribosomal protein L7A family signature 136 153 IPR001921 -
Sebi578g00018 348 PRINTS Ribosomal protein L7A family signature 214 234 IPR001921 -
Sebi578g00018 348 PRINTS Ribosomal protein L7A family signature 156 175 IPR001921 -
Sebi578g00018 348 PRINTS Ribosomal protein L7A family signature 119 136 IPR001921 -
Sebi578g00018 348 PRINTS Ribosomal protein L7A family signature 180 193 IPR001921 -
Sebi578g00018 348 PANTHER RIBOSOMAL PROTEIN L7AE FAMILY MEMBER 132 324 - -
Sebi578g00018 348 Gene3D - 140 323 IPR029064 -
Sebi578g00018 348 SUPERFAMILY L30e-like 178 319 IPR029064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi578g00018 Sebi-Chr578 459710 463778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi578g00018 91 348 Cytoplasmic Ribosomal Protein Gene Family AT3G62870 86.434 3.73e-168 467
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi578g00018 K02936 - jre:108984551 480.33