Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi578g00015 GCTGTCTTCAGAAGATATTTGCGCCCTGAAAAGGATTATCTGTCATTTTCACTTATTTATAAAAAAGGGGAACGGTCACTTGATCTGATCTGCAAGGACAAAGCTGAGGTAGAGGTATGGCTTTTGGGCCTTAAGGAATTAACTTCTACTGGACAGCGTAGTAGGCGGCACACTTTAAGTGATTTAACAGATGATAGTGTTGACTCTGCTCTTAGTGATCGTTCTTTAAGTGGAACACTAGAGTTTACTTCAAGCATTGCCCGCAGAAGGTTCTCTACTGATTCGGTTTCTCGTGAATCTTCATTGCATTGGGCAAGATCAGATGTGGGGTCAGAATATGCAAATATGCCAATAAGGACAAGTGTTGGCGATGGTTCCCGTATTAGTGTGTCAAGTATTGGCTACTCAAGTAGTGTAGGATCAGGATCAGGACCAGATGACATAGAGTCTCTAGGTGATGTTTTTATATGGGGAGAAGTCTGGGCAGATGGCATTTCATCTGATGGGTCAGGGAGTCAAGTCCCTTCTAAGATAGATGTGCTGTCTCCTAAGCCATTAGAGTCTAATGTTGTTCTTGATGTTCATCAGATTGGACCCGGTGTATGTCACATTGCTCTAGTTACAAGGCAAGGAGAGGTTTTTACTTGGGGAGTGGACTCTGGTGGAAGACTTGGTCATGGGTTTGATAAAGATTTTGGTCAACCCCACCTTGTGGAGTCCTTGGCAGTTACTAATGTGGGTTTTGTTGCATGTGGTGAATATCATACATGTGCATTATCTACATCTGGTGATCTATTAAGCTGGGGTGACGGTACACATAATGCTGGAATTCTTGGCCATGGCACTGATGTTAGCCACTGGATGCCAAAGAGGGTCAATGGCCCTTTAGATGGACTTGAGGTTTTATCTATAGCATGTGGCACATGGCATTCAGCATTGACAACCTCCAATGGGAAATTGTTTACCTTTGGTGATGGAACATTTGGTGTATTGGGCCATGGAGATCGAGAGAGTGTGTCATATCCAAAGGAGGTACAATTATTGAGTGGACAAAAGGCTATTAAGGTTGCATGTGGAGTATGGCACACAGCAGCCATTATAGAAGTTATGGATCCGTCTGGTTCAAATGCTGCAACCAGGAAGCTCTTCACATGGGGTGATGGAGACCAATATCGTTTGGGTCATGTTAACAAGGAAACCTACCTTCAACCAACTTGTGTAGCTGCACTTGCTGAATATAATTTTCACCATGTTGCATGTGGACACACTCTGACTGTTGCACTCACTGCATCTGGTCATGTTTTTACTATGGGAAGCACATCCTATGGTCAACTAGGAAGTCCAATGTCTGATGGAAAAGTGCCAATTCTAGTCCGTGATAAGTTAGTAGGTGAGTTTGTGGAGGAAATATCATGTGGGGCACATCATGTTGCTGTATTGACTTCAAGAAGTGAATTATATACTTGGGGGAGAGGTGCTAATGGAAGATTGGGACATGGAGACATGGATGACCAGAGAACTCCAACGTTGGTGGAAGCCTTAAAGGACAGGCATGTAAAGAGTATCTCTTGTGGCTCAAGCTTTACAACTTGTATATGCATACATAAATGGGTTTCTGGAGCTGATCAATCTGTTTGCTCTGATTGTCGACAACCATTTGGTTTTACTAGAAAAAGGCATAATTGTTATAATTGTGGATTGGTGTTTTGCCATCCTTGTAGTTCAAAAAAAGCACTGAAAGCAGCATTGGCTCCAACACCTAGCAAACCACATCGTGTGTGTGATGCTTGTTATACTAAGCTTAAAGGTTCTGAGTCTAGTAGTGCTTCCAATTTTATTAGAGATATTACCCGTCCTTCTTCTAGTTGCTCATATGGAAGGGAAAGATTTGACCGGGGAGAGGTAAGGCCTTCAAGAATTCTCTTGTCTCCTGTCACAGGTCCAATAAAATACCTTAATATGAGGAGTAGTAAGCATGGAAGTACACATGACTCTTCTTTCATGGTCAGAGCTGCTCAAGTTCCTTCGCTTTTACAATTGAAAGATGTTATATTTCCAGGTTCATCGAGTACCATGCAAAATTCTTCCAAGACTAGTATACAACCGTGTCAACCTCCAACTCCACCAGCACCAACTACTTCAAGATCATCATCACCATATGCAAGAAGACCACCAAGCCCACCACGTTCTACCTCCCCTGGATTTTCAAGAAGCCTTGTTGATAATTTTAGGAAGAAAAATGAGCTTTTGAATCAAGAAGTCTCAAAATTGCAAAACCAAATTCGAAGTTTGAAGCAAAAGAGTGACATGCAATATGTGAAGATTGAGGAGCTTCAGAAAAATGTTGAGGAAGCCAACTCATTGGCTGAAGAGGAATCTTCTAAGCATAGAGAAGCAAAGGAATTTATTAAGTCCATGACAGATCAGTTGAGGGAAGTGACTGCAAAGTTGCCACCAGATATTCCTGACAATGAAATTCTGCGAACCATGCATGCTCAAGCTGAAGATTTTGTTAAAGAAAAAATAGAATGTGAATCTTCTTTGTTACCGTTAAGCTCTGAGTCTGAGCAACAAAATGCACCTGATATACCAGCCTCAGATAGTGGCTCATCAAACCTGCAAGAGGAAAGACTGGAAGGAAATGATGAAGCTCCTGGGGTTGTTCTGTCTGTAGATGGAGGAAATGTTCTTCAAGAAAGCAACTGCTTATCTGTGTCTAGTACAGGAGTGTCTCCACCAAGTTCAGAAATCAGTTTAAGATCACCTGAATCTTATAAGCCTGTGAGAGAAGGAGAAACATCAGTCATTGAACAATTTGAGCATGGTGTTTATGTCACACTCATAGTACTACCTAGTGGTCACAAAGTTTTCAAGCGAATTAGATTCAGTAAGCGAAGATTCAATGAGCAGCAGGCAGAAGAATGGTGGAGCAAAAACAAAGATAGGGTGTATAGTAAATATAGTCCAGCACCTATAAAGCATGTAACTAGTGGGTCATCTATTACCACACCTAAAGGTGAAGAGAATATTGAGACCTTGCCTTCTTCCTAA 3051 0.4179 AVFRRYLRPEKDYLSFSLIYKKGERSLDLICKDKAEVEVWLLGLKELTSTGQRSRRHTLSDLTDDSVDSALSDRSLSGTLEFTSSIARRRFSTDSVSRESSLHWARSDVGSEYANMPIRTSVGDGSRISVSSIGYSSSVGSGSGPDDIESLGDVFIWGEVWADGISSDGSGSQVPSKIDVLSPKPLESNVVLDVHQIGPGVCHIALVTRQGEVFTWGVDSGGRLGHGFDKDFGQPHLVESLAVTNVGFVACGEYHTCALSTSGDLLSWGDGTHNAGILGHGTDVSHWMPKRVNGPLDGLEVLSIACGTWHSALTTSNGKLFTFGDGTFGVLGHGDRESVSYPKEVQLLSGQKAIKVACGVWHTAAIIEVMDPSGSNAATRKLFTWGDGDQYRLGHVNKETYLQPTCVAALAEYNFHHVACGHTLTVALTASGHVFTMGSTSYGQLGSPMSDGKVPILVRDKLVGEFVEEISCGAHHVAVLTSRSELYTWGRGANGRLGHGDMDDQRTPTLVEALKDRHVKSISCGSSFTTCICIHKWVSGADQSVCSDCRQPFGFTRKRHNCYNCGLVFCHPCSSKKALKAALAPTPSKPHRVCDACYTKLKGSESSSASNFIRDITRPSSSCSYGRERFDRGEVRPSRILLSPVTGPIKYLNMRSSKHGSTHDSSFMVRAAQVPSLLQLKDVIFPGSSSTMQNSSKTSIQPCQPPTPPAPTTSRSSSPYARRPPSPPRSTSPGFSRSLVDNFRKKNELLNQEVSKLQNQIRSLKQKSDMQYVKIEELQKNVEEANSLAEEESSKHREAKEFIKSMTDQLREVTAKLPPDIPDNEILRTMHAQAEDFVKEKIECESSLLPLSSESEQQNAPDIPASDSGSSNLQEERLEGNDEAPGVVLSVDGGNVLQESNCLSVSSTGVSPPSSEISLRSPESYKPVREGETSVIEQFEHGVYVTLIVLPSGHKVFKRIRFSKRRFNEQQAEEWWSKNKDRVYSKYSPAPIKHVTSGSSITTPKGEENIETLPSS 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi578g00015 1016 Pfam FYVE zinc finger 536 601 IPR000306 GO:0046872
Sebi578g00015 1016 ProSiteProfiles BRX domain profile. 933 988 IPR013591 -
Sebi578g00015 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 549 608 IPR013083 -
Sebi578g00015 1016 SMART fyve_4 534 603 IPR000306 GO:0046872
Sebi578g00015 1016 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 540 602 IPR017455 -
Sebi578g00015 1016 PRINTS Chromosome condensation regulator RCC1 signature 421 439 IPR000408 -
Sebi578g00015 1016 PRINTS Chromosome condensation regulator RCC1 signature 304 320 IPR000408 -
Sebi578g00015 1016 PRINTS Chromosome condensation regulator RCC1 signature 213 229 IPR000408 -
Sebi578g00015 1016 PRINTS Chromosome condensation regulator RCC1 signature 479 500 IPR000408 -
Sebi578g00015 1016 PRINTS Chromosome condensation regulator RCC1 signature 320 334 IPR000408 -
Sebi578g00015 1016 PRINTS Chromosome condensation regulator RCC1 signature 263 279 IPR000408 -
Sebi578g00015 1016 SUPERFAMILY RCC1/BLIP-II 151 537 IPR009091 -
Sebi578g00015 1016 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 356 366 IPR000408 -
Sebi578g00015 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 317 366 IPR000408 -
Sebi578g00015 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 262 312 IPR000408 -
Sebi578g00015 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 431 480 IPR000408 -
Sebi578g00015 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 382 428 IPR000408 -
Sebi578g00015 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 485 532 IPR000408 -
Sebi578g00015 1016 Pfam Regulator of chromosome condensation (RCC1) repeat 211 259 IPR000408 -
Sebi578g00015 1016 SUPERFAMILY PH domain-like 2 48 - -
Sebi578g00015 1016 Gene3D - 376 548 IPR009091 -
Sebi578g00015 1016 Gene3D - 274 375 IPR009091 -
Sebi578g00015 1016 Gene3D - 120 273 IPR009091 -
Sebi578g00015 1016 MobiDBLite consensus disorder prediction 904 925 - -
Sebi578g00015 1016 FunFam PH, RCC1 and FYVE domains-containing protein 1 121 371 - -
Sebi578g00015 1016 Gene3D - 1 57 IPR011993 -
Sebi578g00015 1016 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 12 811 - -
Sebi578g00015 1016 MobiDBLite consensus disorder prediction 904 921 - -
Sebi578g00015 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 484 535 IPR000408 -
Sebi578g00015 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 380 431 IPR000408 -
Sebi578g00015 1016 Pfam Transcription factor BRX N-terminal domain 791 825 IPR027988 -
Sebi578g00015 1016 MobiDBLite consensus disorder prediction 688 738 - -
Sebi578g00015 1016 Pfam Transcription factor regulating root and shoot growth via Pin3 933 987 IPR013591 -
Sebi578g00015 1016 MobiDBLite consensus disorder prediction 851 875 - -
Sebi578g00015 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 211 262 IPR000408 -
Sebi578g00015 1016 MobiDBLite consensus disorder prediction 994 1016 - -
Sebi578g00015 1016 MobiDBLite consensus disorder prediction 851 889 - -
Sebi578g00015 1016 ProSiteProfiles PH domain profile. 1 49 IPR001849 -
Sebi578g00015 1016 Coils Coil 740 795 - -
Sebi578g00015 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 318 369 IPR000408 -
Sebi578g00015 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 432 483 IPR000408 -
Sebi578g00015 1016 SUPERFAMILY FYVE/PHD zinc finger 536 608 IPR011011 -
Sebi578g00015 1016 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 263 317 IPR000408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi578g00015 Sebi-Chr578 271430 276557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi578g00015 930 988 Major Intrinsic Protein MIP AT1G31880 38.983 1.70e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi578g00015 - - gmx:100778984 1435.62