Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi578g00008 ATGGTTAGAGCTCCTTGCTGTGAAAAATTGGGACTCAAAAAGGGTCCTTGGACCCATGAGGAAGATGAAATCCTCATATCCTATATCCGAAAACATGGCCATGGCAATTGGCGTGCCCTCCCAAAACAAGCTGGGCTATTAAGATGTGGAAAGAGCTGTAGACTACGCTGGATTAACTATTTAAGACCTGATATCAAGAGAGGAAATTTTACAAGTGAAGAAGAGGAAATTATTATTAAGATGCATGAGTTGCTTGGGAACAGGTGGTCAGCAATTGCAGCAAAATTACCTGGAAGAACTGACAATGAAATTAAAAATGTGTGGCACACCCACTTGAAGAAGAGGCTACTCAAAACCAATAATAACCAATCCAATTCAGATACCAAAAGAGTTTCCAAACCAAGAATCAAACGATCTGATTCCAATTCCAGCACATTAACTCAATCAGAACCTGCCAGTAGTCTTCATTTCCCTGAAATGGAGACTACATCAGCATGCACTTCTTCCAGTGATTTTTCATCAGTCATTAGTGAAGGACAAATTATGGATAACAGCATCAAGAGTGAAGACATAGAGTCTCTGGGGCCAATGCCTGAAATTGATGAAAGCTTTTGGTCAGACACAACTATGGATGATGAAAGCTCCACCATGCCATCAAATCCTTGGACAGTATCAAATGAATTACCACCTCAATACTCATCTAATTCAGTGGAAATGGAAACCTTTCAACAGAGTAATGGTTATAGTTCAAACTTTGATGATGGCATGGATTTCTGGTATGACTTGTTCATCAGAGCTGGAGAATCAATAGAACTGCCAGAGTTCTGA 828 0.3998 MVRAPCCEKLGLKKGPWTHEEDEILISYIRKHGHGNWRALPKQAGLLRCGKSCRLRWINYLRPDIKRGNFTSEEEEIIIKMHELLGNRWSAIAAKLPGRTDNEIKNVWHTHLKKRLLKTNNNQSNSDTKRVSKPRIKRSDSNSSTLTQSEPASSLHFPEMETTSACTSSSDFSSVISEGQIMDNSIKSEDIESLGPMPEIDESFWSDTTMDDESSTMPSNPWTVSNELPPQYSSNSVEMETFQQSNGYSSNFDDGMDFWYDLFIRAGESIELPEF 275
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi578g00008 275 CDD SANT 69 112 IPR001005 -
Sebi578g00008 275 CDD SANT 16 61 IPR001005 -
Sebi578g00008 275 Gene3D - 13 66 - -
Sebi578g00008 275 MobiDBLite consensus disorder prediction 115 171 - -
Sebi578g00008 275 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Sebi578g00008 275 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Sebi578g00008 275 FunFam Myb transcription factor 11 67 - -
Sebi578g00008 275 FunFam Transcription factor MYB15 68 143 - -
Sebi578g00008 275 Gene3D - 69 150 - -
Sebi578g00008 275 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Sebi578g00008 275 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 216 - -
Sebi578g00008 275 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Sebi578g00008 275 SMART sant 66 114 IPR001005 -
Sebi578g00008 275 SMART sant 13 63 IPR001005 -
Sebi578g00008 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Sebi578g00008 275 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Sebi578g00008 275 MobiDBLite consensus disorder prediction 138 171 - -
Sebi578g00008 275 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi578g00008 Sebi-Chr578 171317 173054 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi578g00008 1 275 MYB Transcription Factor Family AT2G31180 50.360 4.14e-82 245
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi578g00008 Myb_DNA-binding 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi578g00008 K09422 - gmx:100806975 405.601