Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi577g00026 ATGGACACTGACGAGGGTCAAGGAGTGGCTCAGCAAACCCCAGAGGAACTCGTTGCGAGGTGCATAGCCCCTGTCAAGAAGGACTTCCTTCGTCCTCCTCCTGTCCGCGCTTCCTCTCCAAACGACGACGTTTCCGTCGCCAATGACAAGCCCCCTGCTCTCGTCAAGGAGAAGAAGTCTAAGCGCCAACTCAAACGCGAACGTCGTCAGGAACAAAAGTCAGCACGAAACCTGTGTCCAGAACTTGCTAGGACAAGTGATGTTAGTTCATGTCCTTACAAAGACAAGTGTCGCTTCAGCCATGATTTGGAAGCCTTTAAGGCACAGAAACCAGCTGATCTGGAGGGAGAATGCCCTTTCTTTAAATCTCAAGTGTCTTGCCCTTATGGGTTAGCATGTAGATTCTCGAGTACGCATGGAGAGGGTGTGCCTTCTGCAAATCCCAATGCTGTGAAGAATGCTTCTGAGGTGAATGGATTGAGCAAAGATGTTCAAAAGCTTTTGTGGAAAAATAAGATGGGCTTCCCCAAAGCAGATGCCAAACTCAAAAGTCTTGGCCTCTCGGGACTCTCTAGGTCAAAAAGGAATGACTTGGAAGATAAAGATGGTGGCGGCACTGGTTCAAATAAATGTGACCAGACTGATGACAATGCCTCTTGTGTGGTTATGCCTGACTCAGGTTCCAAGTTAGAATGCTCTGCAGAAGTTATAAAAGACGATGATTTTGATGGAAAATCTGAACCTGATGTACTTTGTCCCCAGAAGAGAAGAAAAACAGAAGAAAATGATGGTCCTGAGGAGACAGATAATGAAGGTGTATGTGTTACTGATACTGAGCAAATTGTTGAAAGAAACTGCACAAAATCTGAACCAGAAGCAGAAACTGATACTATAACCCCGGAAACTGATCTAAGCCTGAAGTTGCACTCACGCGAAAAGAAGCTTATTGATTACCGGGAGAAGTTGTATCTTGCACCCTTGACCACTGTTGGAAATCTCCCTTTCCGGAGAGTTTGCAAAGTATTAGGAGCTGATATAACATGTGGTGAAATGGCAATGTGCACAAATCTTTTGCAGGGTCAAGCTTCAGAATGGGCATTGCTGAGACGTCATTCATCTGAAGATTTATTTGGTGTACAAATCTGTGGGGCATATCCGGATACTGTGGCAAGAACAGTTGAACTAATAGAACAAGAATGTACAATAGATTTTATTGATATAAATATGGGTTGCCCTATTGACATTGTTGTGAATAAGGGTGCGGGATCAGCTCTTCTAACCAAACCAATGCGGATGAAAAGTATTGTAGAAGTAGCTTCAGGCACAGTAGAAAAACCAATAACTGTCAAGGTACGGACAGCTTATTTTGAAGGAAAGAATCGCATTGACTCTCTGATAGCAGACATAGGTTCATGGGGAGCCAGTGCAGTGACAATACATGGAAGGTCACGTCAACAACGCTATAGCAAGCTTGCTGATTGGGACTATATATACCAGTGTTCCAGGAAGGCCCCTAATACTTTGCAAGTAGTAGGGAATGGAGATGTTTTCTCATTTGTTGACTGGAACAACCACAGAACTGAATGCCCTGAACTTGCTACTTGCATGATTGCCCGTGGTGCACTGATTAAGCCTTGGTTATTCACAGAGATCAAGGAACAGAGACATTGGGACATCAGTTCTGGCGAGCGACTAAATATTCTCAAAGATTTTGTGCGATTTGGCCTTGAACACTGGGGTTCTGACACAAAAGGGGTGGAGACAACCAGGCGGTTCTTGTTGGAATGGCTTAGCTACACTTTTAGGTACATACCAGTTGGTCTTTTGGATGTGGTTCAACAGCGAATAAACTGGCGTCCACCATCTTACTATGGGCGTGATGAGCTTGAGACACTGATGGCCTCAGACTCTGCAGCTGACTGGATACGATTATCAGAGATGTTACTTGGCAAGGTTCCAGATGGCTTTACATTCGCCCCAAAGCATAAATCAAATGCTTATGATAGAGCTGAAAATGGCTAA 2022 0.4456 MDTDEGQGVAQQTPEELVARCIAPVKKDFLRPPPVRASSPNDDVSVANDKPPALVKEKKSKRQLKRERRQEQKSARNLCPELARTSDVSSCPYKDKCRFSHDLEAFKAQKPADLEGECPFFKSQVSCPYGLACRFSSTHGEGVPSANPNAVKNASEVNGLSKDVQKLLWKNKMGFPKADAKLKSLGLSGLSRSKRNDLEDKDGGGTGSNKCDQTDDNASCVVMPDSGSKLECSAEVIKDDDFDGKSEPDVLCPQKRRKTEENDGPEETDNEGVCVTDTEQIVERNCTKSEPEAETDTITPETDLSLKLHSREKKLIDYREKLYLAPLTTVGNLPFRRVCKVLGADITCGEMAMCTNLLQGQASEWALLRRHSSEDLFGVQICGAYPDTVARTVELIEQECTIDFIDINMGCPIDIVVNKGAGSALLTKPMRMKSIVEVASGTVEKPITVKVRTAYFEGKNRIDSLIADIGSWGASAVTIHGRSRQQRYSKLADWDYIYQCSRKAPNTLQVVGNGDVFSFVDWNNHRTECPELATCMIARGALIKPWLFTEIKEQRHWDISSGERLNILKDFVRFGLEHWGSDTKGVETTRRFLLEWLSYTFRYIPVGLLDVVQQRINWRPPSYYGRDELETLMASDSAADWIRLSEMLLGKVPDGFTFAPKHKSNAYDRAENG 673
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi577g00026 673 MobiDBLite consensus disorder prediction 241 264 - -
Sebi577g00026 673 MobiDBLite consensus disorder prediction 192 217 - -
Sebi577g00026 673 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 69 148 - -
Sebi577g00026 673 Gene3D - 68 147 - -
Sebi577g00026 673 PANTHER TRNA-DIHYDROURIDINE(47) SYNTHASE [NAD(P)(+)]-LIKE 12 667 - -
Sebi577g00026 673 CDD DUS_like_FMN 321 556 IPR035587 -
Sebi577g00026 673 FunFam tRNA-dihydrouridine(47) synthase [NAD(P)(+)] 317 559 - -
Sebi577g00026 673 ProSiteProfiles Zinc finger C3H1-type profile. 117 142 IPR000571 GO:0046872
Sebi577g00026 673 SUPERFAMILY FMN-linked oxidoreductases 321 634 - -
Sebi577g00026 673 Gene3D Aldolase class I 317 559 IPR013785 -
Sebi577g00026 673 Pfam Dihydrouridine synthase (Dus) 324 559 IPR035587 -
Sebi577g00026 673 ProSitePatterns Uncharacterized protein family UPF0034 signature. 405 423 IPR018517 GO:0008033|GO:0017150|GO:0050660
Sebi577g00026 673 MobiDBLite consensus disorder prediction 241 271 - -
Sebi577g00026 673 MobiDBLite consensus disorder prediction 29 78 - -
Sebi577g00026 673 Coils Coil 54 74 - -
Sebi577g00026 673 ProSiteProfiles Zinc finger C3H1-type profile. 73 104 IPR000571 GO:0046872
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Sebi577g00026 Dus 2.5e-50 CL0036
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi577g00026 K05544 - gmx:100783494 1164.06