Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi577g00015 ATGCCAGCGCTTTGCGACGTTTGTAAGAGTGCCGCCGCGATTCTCTTCTGCGTTGCTGACGAGGCTGCTCTCTGCTATGCTTGCGATGATAAGGTCCATATGTGTAACAAGCTTGCTAATAAACACATTCGGGTTGGGCTTGCTGACCCCAGTGACGTTCCTCGCTGTGACATATGTGAAAATGCATCTGCTTTCTTTTACTGTAAGATAGATGGTAGTTCGTTGTGTCTACAATGTGATATGATGGCACATGTTGGTGGTAAAAGAACCCATGAAAGATATCTTCTATTGAGGCAGAGAGTTGAGTTTCCAGGTGACAAATCTGGCCGATTGGAAGAACTAGGGCTGCGACAACTGGATCAAAATGAATCACGGAAGGACAAAAGTCAGTCACTGATGCTAAAAACAAGAGATCGTCAGCAGAATGATAGGGTCTCTCCTGTTCCAATGCTAGAAAATGATGTTGAAGGTCATGGAAAAATGGATAAAAAATTAATTGATCTTAATACTAGACCACAATGGTTAAATGGACCAGACCAGCATTAA 546 0.4304 MPALCDVCKSAAAILFCVADEAALCYACDDKVHMCNKLANKHIRVGLADPSDVPRCDICENASAFFYCKIDGSSLCLQCDMMAHVGGKRTHERYLLLRQRVEFPGDKSGRLEELGLRQLDQNESRKDKSQSLMLKTRDRQQNDRVSPVPMLENDVEGHGKMDKKLIDLNTRPQWLNGPDQH 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi577g00015 181 ProSiteProfiles Zinc finger B-box type profile. 51 96 IPR000315 GO:0008270
Sebi577g00015 181 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Sebi577g00015 181 Gene3D Classic Zinc Finger 2 95 - -
Sebi577g00015 181 FunFam B-box zinc finger protein 19 2 92 - -
Sebi577g00015 181 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 135 - -
Sebi577g00015 181 SMART bboxneu5 51 96 IPR000315 GO:0008270
Sebi577g00015 181 SMART bboxneu5 1 47 IPR000315 GO:0008270
Sebi577g00015 181 MobiDBLite consensus disorder prediction 120 142 - -
Sebi577g00015 181 CDD Bbox1_BBX-like 4 47 - -
Sebi577g00015 181 MobiDBLite consensus disorder prediction 120 181 - -
Sebi577g00015 181 Pfam B-box zinc finger 52 92 IPR000315 GO:0008270
Sebi577g00015 181 Pfam B-box zinc finger 4 42 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi577g00015 Sebi-Chr577 250434 252262 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi577g00015 1 181 C2C2-CO-like Transcription Factor Family AT2G21320 55.801 3.19e-68 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Sebi577g00015 zf-B_box 3.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi577g00015 - - gmx:100527369 295.049