Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi577g00003 ATGGAGTTTGCGGTGGCAAAAGCTTTGAAACCGAGTTTAAGGAGGGAGTTTTTTCAGCAAGCGCTTTGTGAAGAGATTTTTTGCTTGAACGCCAACACAGTGGTTGGTGGTGAGGATTTTTCCGTGGATGACCTCCTTGACTTCTCTAACGACGAGTTCCAACAAGAGTATGACGAAGAAAAAGACAGTTTATCTGCTTCTTCCTCGCTCTCACAGGATAGCAACTCCAATTCCACCGGCGTTTCCTCTGATTCCATTTTCTCCACCGAATTAGCCGTTCCGGCTGGTGATTTGGCAGACCTAGAGTGGGTTTCTCACTTTGTGGATGACTCTATTCCAGAGCTCTCTCTTCTGTATCCGGTTCAGCAAACGAACCGGTGGGCTGAACCGGAGCAAAGAGTGTGTTCAGCGAAGAAAACTCCTCGTTTTCCCTCTGAAATGAAAATAACAACTAAGGCCAGAACCATGAAGAATAGAAAACCGAACCCTCGCGTCGGGTCACTTATCCCCTTGCTCTCGCGCCCGTCTTCGCCGTCGTCGTGTTCCTCCTCCGTGCTTTCATCGACGGCGCCACCGCCGCCTGTTGTGTTTGGCGAGCCGCCGGCGAAGAAGCAGAAGAGAAAGGCCGAGGCCCAGTTACAGAGACGGTGCAGTCATTGCCAAGTGCAGAAGACGCCGCAGTGGAGGACCGGTCCACTAGGCGCCAAAACCCTTTGCAACGCGTGCGGGGTTCGTTACAAGTCCGGTCGGCTTTTTTCAGAGTATAGACCGGCCTGCAGCCCCACCTTCTGCAGTGAGATTCACTCGAATAGCCACCGTAAAGTGTTGGAGATAAGGCGGAAGAAGGAGGTGGCTGGACTGGAGACCGGTTTGGCTCAGACTCAAATGGTCCCAACTTGCTGA 903 0.5227 MEFAVAKALKPSLRREFFQQALCEEIFCLNANTVVGGEDFSVDDLLDFSNDEFQQEYDEEKDSLSASSSLSQDSNSNSTGVSSDSIFSTELAVPAGDLADLEWVSHFVDDSIPELSLLYPVQQTNRWAEPEQRVCSAKKTPRFPSEMKITTKARTMKNRKPNPRVGSLIPLLSRPSSPSSCSSSVLSSTAPPPPVVFGEPPAKKQKRKAEAQLQRRCSHCQVQKTPQWRTGPLGAKTLCNACGVRYKSGRLFSEYRPACSPTFCSEIHSNSHRKVLEIRRKKEVAGLETGLAQTQMVPTC 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi577g00003 300 MobiDBLite consensus disorder prediction 57 83 - -
Sebi577g00003 300 SMART GATA_3 211 265 IPR000679 GO:0006355|GO:0043565
Sebi577g00003 300 ProSiteProfiles GATA-type zinc finger domain profile. 211 247 IPR000679 GO:0006355|GO:0043565
Sebi577g00003 300 Pfam GATA zinc finger 217 250 IPR000679 GO:0006355|GO:0043565
Sebi577g00003 300 PANTHER GATA TRANSCRIPTION FACTOR 27 286 - -
Sebi577g00003 300 PIRSF Txn_fac_GATA_plant 17 299 IPR016679 GO:0003677|GO:0005634|GO:0045893
Sebi577g00003 300 MobiDBLite consensus disorder prediction 157 205 - -
Sebi577g00003 300 MobiDBLite consensus disorder prediction 172 190 - -
Sebi577g00003 300 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 209 273 - -
Sebi577g00003 300 Gene3D - 211 261 IPR013088 GO:0006355|GO:0008270
Sebi577g00003 300 CDD ZnF_GATA 216 273 IPR000679 GO:0006355|GO:0043565
Sebi577g00003 300 ProSitePatterns GATA-type zinc finger domain. 217 242 IPR000679 GO:0006355|GO:0043565
Sebi577g00003 300 MobiDBLite consensus disorder prediction 64 83 - -
Sebi577g00003 300 FunFam GATA transcription factor 206 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi577g00003 Sebi-Chr577 100434 101411 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi577g00003 8 298 C2C2-Gata Transcription Factor Family AT5G66320 40.240 2.12e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Sebi577g00003 GATA 9.4e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi577g00003 - - gmx:100780311 388.267