Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi575g00039 ATGGATGTTCAAGTGATAAACATGGGAGAAGGCAGTGACCATCGAGCTATGACAAATGGTGGGGATGCTGAGCCTAGTGAAGGTGAAGTTAATAATGCTGGAAACTCTGGATCTCATGTTGAGGTTGGGGTTCCTGAGCCATATTTGGGAATGAAATTTGATTCTGAAGATGCTGCAAAAACTTTCTGCAATGACTATGCCAGACGTGCAGGTTTCAGCTCCAAAGCTGGCTCACTTGGTCAGCTTAAATCTGATGGGACCAATATGTACTGGGAATTTGTGTGCAGGGGGGAAGATTTAAAAAGAAAGCTTACTGAAAGTTGTAACGCAATGATTAGGATAGAGAAAAAGGGTCAAAGTAAGTGGTTTGTTACAAAATTTGTGAAGGAGCATAACCATTCCATGGTGAGCCATAGTAAGGTGAATAAACTTCAACCACGCAAGCACTTTTCTAGTGTTGGAAGAACTATGCCTGATACTTACCAAGGAGTGGGGCTCGTTCCAAGTGGTGTCATGTATATATCTTTAGATGGGAATCACATGCCGACTGAGAATATTCATGGGATTAGGAATAATCCTGCAGCTACTACTGCTGAAACTAGTCACCCGGTTAATATTCATGGGATTAGGAATAATCCTGCAGCTGCTACTGCTGAAACTAGTCACCTAGTTAAAAATCCCGTATCAATGAATTATACTGTCAGTGTCAAGCCACCTATTCAAAAGAGGACGTTAGGGAGGGATGCTCGGAACCTGCTGGATTATTTTAAGAAAATACAGGCTGAGAACCCTGGCCATGAAAAGTTGGCCCATGTATGTCACATGCATCCAAATTTTCAGATTGAACTTTATAATTGTATTAACCTGACGGAGACAATTGAGGAGTTTGATTCATCTTGGAATTCTATCATCAGTAAATATGAACTCGGAAAAAATGATTGGCTTCAGTCCTTGTATAGTGCTCGTGCTAAATGGGTTCCAGCATATTTCCGTGATTCATTTTTTGCTGTAATATCTCCTAATCATGGATTTGATGGTTTTTTTTATGATTTTGTCAACCAGCAAACAACATTACCCATGTTCTTTAGGCAGTATGAACAAGCTTTGGAGAGCTGGTCTCAAAAGGAAATAGAAGCAGATTTTGAGACAATTTGCACCTCACCAGTTCTAAAGACACCTTCACCAATGGAGAAGCAGGCTGCTGATCTTTATACACGGAAAATATTTTTGAAGTTTCAAGAAGAGCTAGTTGAAACTTTTGCTTATACTGCCAACAGATTTGAAGAAGATGGAGAAAATAGTATATTCAGGGTTGCAAAATTTGAGGATGACCAAAAGTCATATATTGTCACATTAAACCATTCTGAGTTGAGAGCTAACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTTTGCAGGCATGTTTTGACTGTTTTCACTGTGACTAATGTACTTACATTACCATCCCATTACATCTTAAAACGGTGGACAAGGAATGCAAAAAGCGGCATTGGATCAGATGAATGTGCTGGTGAATCACATGGAAATGAATCTCTGACATCACGGTATGCCAATCTTTGTCAGGAAGCCATCAGATGTGCTGAGGAAGGGGCAATAGCTGTGGAAACTTATGAGGTTGCAGTAAGTGCTCTTAGAGAAGCTAGAAAAAAGATTGCTGTCATGAAGAGAAGTGTTGCCAAAGCTGTGCCTCCTAGTAATCCAGTCAGTGGGACTGCTCATGACAACAAGAAATCCCCTACTCCAACATCAGATACAACCCCTCTTTTATGGCCGCGACAAGATGAAACAAGGAGGTTTAATCTTAATGATGCTGGTGCTCCTGTTCAATCAGTTGCTGATCTAAATTTACCACGAATGGCCCCAGTGTCTCTTCACCAAGATGATGGTCCACATGAAAATATGGTGGTCCTTCCACGTCTGAAATCAATGACATGGGGAATGGAGAACACAAACTCAACTCCAGGGAATAAAGTAGCTAATATCAATCTTAAGTTGCAACATTCTAGCAGGATTCCATCAACAGAATTTGAGGTGAAGTTTCAGGTCTCAAGAGTTACGTTGGAACCAATATTGAAGTCTATGACCCAGATCAGTGAACAGCTTTCAACAGCTCATAAGGTTGCTGTAATAAGTCTCAAGCTTCAAGAAATCCAGACAAATTCTGGTGAATCTGAAATTAAGTTCCAGGTGTCCCGGGACACATTAGGTGCTGTGCTACGATCGATGGCCTATATTCGTGAGCAACTTTCTTGTACTGGCGATGTGCACTCAGATCCTGCATTGAAAAGGCATCGGAAGTGA 2325 0.4095 MDVQVINMGEGSDHRAMTNGGDAEPSEGEVNNAGNSGSHVEVGVPEPYLGMKFDSEDAAKTFCNDYARRAGFSSKAGSLGQLKSDGTNMYWEFVCRGEDLKRKLTESCNAMIRIEKKGQSKWFVTKFVKEHNHSMVSHSKVNKLQPRKHFSSVGRTMPDTYQGVGLVPSGVMYISLDGNHMPTENIHGIRNNPAATTAETSHPVNIHGIRNNPAAATAETSHLVKNPVSMNYTVSVKPPIQKRTLGRDARNLLDYFKKIQAENPGHEKLAHVCHMHPNFQIELYNCINLTETIEEFDSSWNSIISKYELGKNDWLQSLYSARAKWVPAYFRDSFFAVISPNHGFDGFFYDFVNQQTTLPMFFRQYEQALESWSQKEIEADFETICTSPVLKTPSPMEKQAADLYTRKIFLKFQEELVETFAYTANRFEEDGENSIFRVAKFEDDQKSYIVTLNHSELRANCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSGIGSDECAGESHGNESLTSRYANLCQEAIRCAEEGAIAVETYEVAVSALREARKKIAVMKRSVAKAVPPSNPVSGTAHDNKKSPTPTSDTTPLLWPRQDETRRFNLNDAGAPVQSVADLNLPRMAPVSLHQDDGPHENMVVLPRLKSMTWGMENTNSTPGNKVANINLKLQHSSRIPSTEFEVKFQVSRVTLEPILKSMTQISEQLSTAHKVAVISLKLQEIQTNSGESEIKFQVSRDTLGAVLRSMAYIREQLSCTGDVHSDPALKRHRK 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi575g00039 774 Pfam FAR1 DNA-binding domain 62 136 IPR004330 -
Sebi575g00039 774 MobiDBLite consensus disorder prediction 576 597 - -
Sebi575g00039 774 Pfam SWIM zinc finger 448 482 IPR007527 GO:0008270
Sebi575g00039 774 ProSiteProfiles Zinc finger SWIM-type profile. 448 484 IPR007527 GO:0008270
Sebi575g00039 774 SMART 26again6 459 486 IPR006564 GO:0008270
Sebi575g00039 774 MobiDBLite consensus disorder prediction 568 597 - -
Sebi575g00039 774 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 36 158 IPR031052 GO:0006355
Sebi575g00039 774 MobiDBLite consensus disorder prediction 1 40 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi575g00039 Sebi-Chr575 573715 579217 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Sebi575g00039 FAR1 3.8e-10 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi575g00039 - - gmx:100786516 781.941