Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi575g00013 ATGCCTAGTTCATGCTATAAGTGCGGTGAAGTAGGACATTTTGCCCGAGAATGCTTAAGTTCTGTCAAGGCAAGTTCAAAGTTTCAAACTGAGAGCAGTGATGCAACCACACCTAGTTCATGCTATAAGTGCGGTGAAGTAGGACATTTTGCCCGAGAATGCTCAAGTTCTGTCAAGGCAAGTTCAAAGTTTCAAACTGAGAGCAGTGATGCAGCCACACCTACTTCATGCTATAAGTGTGGTGAAGAAGGACATTTTGCCCGAGAATGCTCAAGTTCTGTTAAGGTAGGCAAGAGGAAACGTGAATTATTAAGTACAAAAACTCCAAGATCCCATAAAGAGAATGGCTACATGGAATATAATTATGCACCTCATGATATGGGTAAGGGTCTTAAGAAGAAAAAGCCTCTTACAGAAGAAAGAGGCATTACAACTCCACAGAAATCAAAGCATACAGATAGTTGGATGATAGAACATCCTGTAATGGAAGTCATACTCCAAGTTCTCATTCTTCTAAGATGTGGAAGGTCCATGATGGAACCCCTAATTCAGGAGGATCATCCAAGACTTTTCATCATAGATTCTCAGCATCTAGATTTGGCAACACGGATAGTAATGGATTGGAGAGAAGTTACAACTGGTGGTAGCTTTCCACAATTCTGGATTAACCTGCCATCTGTAAACCAACAAAATTACCCTCATTTTCAATTTGCAGTTGCTACAACAATGTCAGATGACATGCTCGTGCATTTCTCGTCCAACTCTTCCAACCAATCGGACCAGTCTCTGCCTACAAAGATTGCAAAGCTGGAAGCTCGAATGGTGGGCAAAGGTTCCTCCACCGCTGCTCAGCCTCAGCAGTCAGGTTGGTCCTCTGTTCCTTCAGCTGGGAAATTCGGTGGAGCTGCTGAGGATTTGCCTGAACCATCCACATCAAGTGATTCTGATGATGATAATGGTGGGGAATTCCTAATTCAAGCCAACACACAGAAGCGCCAGAAACTTCAAGAAGCTGATAACTCTAATGTTTTTGAACGTGTTGAGGTTGTTACTGAAGGAAGACAAACTAGTTTGGATGCTATGGAGACAAAAGTTAATGTTGATGTGAATAGAAAGAAACATGGTCGAGGAAGAGGGGGTTCTGGTTCAGGTAGGGGCCGTGGTTCCAGGGTGAATGATCAGACCAGAACACAAATATCTCCTCCAACTGTTTTGGCTTCTAATGGTCAGATTGAGAATGTACACCATAAAGATGGCAGACTGAAAGATCAGTTTCATAGTGATAATTTTTCTTCATCAGAGGAGGAGGTTGCATCTCTACGTGCAAAAGTTGTTGCATTGGAGGAGGACTTGCGTAAATCAAAGCACGAAGCCTCTGATTATCAGAATCTTTGTCGACAGCTAGAAAAGGAACTTAATGACCTGAAGGATCAGGAACAGCAAATGAAGCCCAAGAGAACAAAAATAATATCTGATTTACTGATATCAGTCTCAAAGTCTGAGAGACAAGAAGCAAGGCTGAAAGTACGACAAGACTCATTGAGACTTGGAAATGTCGGTGTAATCAGAGCCGGAACTGTCATATCTGAGACCTGGGAAGATGGTCAAGCATTAAAGGATCTGAATGCCCAGCTTGGTGATGGAACGGATGCAGAGGCTGGATTACCGGAAGATGTTCTCATTCATGATGAAATCTATAAATCTCGACTAGCTAGCATTAAACGAAAAAATCTTCAGGAAGAAGAAACTATTTTGCGGGAGAGGGATCGCTATGAACTAGAGAAGGGGAGGTTGATTCGTGAGATGAAACGCATACGGGATGAAGATGGTTCACGGTTTAACAACTTTCAGATTCTAAATCATCGTTATGCACTTCTAAACCTTCTTGGGAAGGGAGGATTCAGTGAGGTGTACAAGGCTTTTGACTTGGTGGAGCATAGATATGTTGCTTGCAAGCTTCATGGTTTAAATGCTCAATGGAGTGAAGAGAAGAAGCAAAGTTACATACGGCATGCAATTCGGGAGTATAATATTCACAAGACGCTGGTCCATCGTCACATTGTTCGATTATGGGACATCTTTGAGATTGATCATAATACATTCTGCACTGTTCTAGAGTACTGTAGTGGTAAGGATCTTGATGCTATCCTTAAAGCAACACCTATATTGCCTGAGAGGGAGGCTAGGGTCATTCTAGTTCAGGTTTTTCAAGGCCTTATTTACATGAATAAAAGAACACAGAAGATTATCCATTATGATTTAAAGCCTGGAAATGTTCTGTTTGATGAGCTTGGAGTTGCCAAAGTGACTGATTTTGGTCTTAGCAAGATAGTGGAGGATGATGTGGGATCCCAGGGTATGGAACTCACATCCCAGGGAGCTGGAACATATTGGTATTTGCCTCCAGAATGCTTTGAGCTTAGCAAGACACCTCTTATATCATCAAAGGTTGATGTCTGGTCTGCTGGTATTATGTTCTATCAAATGCTCTTTGGTAAACGTCCTTTCGGACATGACCAAACACAAGAGAGAATACTTCGTGAAGACACAATTATTAAGGCACGCAAGGTTGAATTTCCCCCTAAACCTACTGTTTCTAATGAGGCAAAGGATTTTATTCGGAAGTGTCTAACATATAACCAGGTTGAGAGACCAGATGTATTAACCATTGCTCAAGATCCCTATCTCACTTACTCAAAGAAGTGA 2706 0.4191 MPSSCYKCGEVGHFARECLSSVKASSKFQTESSDATTPSSCYKCGEVGHFARECSSSVKASSKFQTESSDAATPTSCYKCGEEGHFARECSSSVKVGKRKRELLSTKTPRSHKENGYMEYNYAPHDMGKGLKKKKPLTEERGITTPQKSKHTDSWMIEHPVMEVILQVLILLRCGRSMMEPLIQEDHPRLFIIDSQHLDLATRIVMDWREVTTGGSFPQFWINLPSVNQQNYPHFQFAVATTMSDDMLVHFSSNSSNQSDQSLPTKIAKLEARMVGKGSSTAAQPQQSGWSSVPSAGKFGGAAEDLPEPSTSSDSDDDNGGEFLIQANTQKRQKLQEADNSNVFERVEVVTEGRQTSLDAMETKVNVDVNRKKHGRGRGGSGSGRGRGSRVNDQTRTQISPPTVLASNGQIENVHHKDGRLKDQFHSDNFSSSEEEVASLRAKVVALEEDLRKSKHEASDYQNLCRQLEKELNDLKDQEQQMKPKRTKIISDLLISVSKSERQEARLKVRQDSLRLGNVGVIRAGTVISETWEDGQALKDLNAQLGDGTDAEAGLPEDVLIHDEIYKSRLASIKRKNLQEEETILRERDRYELEKGRLIREMKRIRDEDGSRFNNFQILNHRYALLNLLGKGGFSEVYKAFDLVEHRYVACKLHGLNAQWSEEKKQSYIRHAIREYNIHKTLVHRHIVRLWDIFEIDHNTFCTVLEYCSGKDLDAILKATPILPEREARVILVQVFQGLIYMNKRTQKIIHYDLKPGNVLFDELGVAKVTDFGLSKIVEDDVGSQGMELTSQGAGTYWYLPPECFELSKTPLISSKVDVWSAGIMFYQMLFGKRPFGHDQTQERILREDTIIKARKVEFPPKPTVSNEAKDFIRKCLTYNQVERPDVLTIAQDPYLTYSKK 901
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi575g00013 901 SMART serkin_6 623 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi575g00013 901 MobiDBLite consensus disorder prediction 387 402 - -
Sebi575g00013 901 MobiDBLite consensus disorder prediction 279 294 - -
Sebi575g00013 901 ProSitePatterns Serine/Threonine protein kinases active-site signature. 749 761 IPR008271 GO:0004672|GO:0006468
Sebi575g00013 901 ProSiteProfiles Zinc finger CCHC-type profile. 5 18 IPR001878 GO:0003676|GO:0008270
Sebi575g00013 901 SUPERFAMILY Retrovirus zinc finger-like domains 4 23 IPR036875 GO:0003676|GO:0008270
Sebi575g00013 901 Coils Coil 588 608 - -
Sebi575g00013 901 CDD STKc_TLK 622 895 - -
Sebi575g00013 901 ProSitePatterns Protein kinases ATP-binding region signature. 629 652 IPR017441 GO:0005524
Sebi575g00013 901 Pfam Zinc knuckle 40 55 IPR001878 GO:0003676|GO:0008270
Sebi575g00013 901 Pfam Zinc knuckle 77 91 IPR001878 GO:0003676|GO:0008270
Sebi575g00013 901 Pfam Zinc knuckle 4 18 IPR001878 GO:0003676|GO:0008270
Sebi575g00013 901 ProSiteProfiles Zinc finger CCHC-type profile. 77 90 IPR001878 GO:0003676|GO:0008270
Sebi575g00013 901 PANTHER MIXED LINEAGE PROTEIN KINASE 242 900 - -
Sebi575g00013 901 SUPERFAMILY Protein kinase-like (PK-like) 616 897 IPR011009 -
Sebi575g00013 901 MobiDBLite consensus disorder prediction 274 322 - -
Sebi575g00013 901 FunFam Serine/threonine-protein kinase TOUSLED 614 901 - -
Sebi575g00013 901 ProSiteProfiles Protein kinase domain profile. 623 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi575g00013 901 SMART c2hcfinal6 40 56 IPR001878 GO:0003676|GO:0008270
Sebi575g00013 901 SMART c2hcfinal6 4 20 IPR001878 GO:0003676|GO:0008270
Sebi575g00013 901 SMART c2hcfinal6 76 92 IPR001878 GO:0003676|GO:0008270
Sebi575g00013 901 ProSiteProfiles Zinc finger CCHC-type profile. 41 54 IPR001878 GO:0003676|GO:0008270
Sebi575g00013 901 MobiDBLite consensus disorder prediction 367 402 - -
Sebi575g00013 901 Coils Coil 430 485 - -
Sebi575g00013 901 SUPERFAMILY Retrovirus zinc finger-like domains 34 92 IPR036875 GO:0003676|GO:0008270
Sebi575g00013 901 Gene3D - 38 66 - -
Sebi575g00013 901 Gene3D - 70 113 - -
Sebi575g00013 901 Gene3D - 2 37 - -
Sebi575g00013 901 Gene3D Transferase(Phosphotransferase) domain 1 614 901 - -
Sebi575g00013 901 Pfam Protein kinase domain 624 896 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi575g00013 Sebi-Chr575 218262 230376 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi575g00013 606 901 MAP Kinase Kinase Kinase AT3G13530 28.383 1.24e-28 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TLK Sebi575g00013 Pkinase 5.3e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi575g00013 K08864 - gmx:100805168 1128.24