Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi575g00002 ATGGAACCCAAATCCAGATTATCAGTTTTCTTCTTGTCATGGGCCTGTTTATCGTGGAGTGTAGAGTCAAAGTGTAGCAGGGGTTGTGACTTAGCTTTAGCTTCCTACTATATATGGATAGGTTCCAACCTGACATATATTTCAGAGATTATGGAATCCCGGGTTCTTTCAAAACCTGAAGATATTGTTCTTTTAAATCCCGGGGTCTACAGAGATGCAATCCAAGTCTTCAGTAGGGTTAACATTCCTTTCCCTTGTGATTGCATTAATGGTGAGTTTCTGGGTCACACATTTCTGTACGAGATTCATCCACGGGATACCTATGAATCAGTTGCAAGCACGACCTTTTCCAATTTGACCACTGATGTGTGGATGCAAAGATTCAACATTTATTCACCAGACAATATTCCCGATTTTGGAAAAGTTAATGTGACGATTAACTGTTCCTGTGGGAACAGCAAGGTTTCCGAGGATTATGGGCTGTTCATCACATATCCACTTAGAGCTGAGGATACTTTGCAGTCCATTGCAGACCAGACCAAGCTTGAGGCTGAGTTGCTGCAGAGGTACAACCCGGGTGTGGATTTCAGCCAAGGAAGTGGTCTGGTTTTCATTCCAGGGAAAGACCAAAATGGTAGCTATGTGCCCCTTCACCCTAGCACAGGAGGTCTAGCAGGTGGAGCTATTGCTGGAATATCTATAGGAGTAATAGCAGGGGTTTTATTATTGGCATTTTGTGTGTATATTAAGTATCACCAAAAGAAGAAGGCACAATTGAAAAATTTGACCTTGGATAATTCCACGGTGAACTCTGCTGGAGTTAGTAAAGGCACTACGGTGGAAGAATCACGAGAGTTTTCATACAAAGAACTGGCCAATGCCACAAATAACTTCAGTATGGCTAATAAAATTGGTCAAGGTGGTTTTGGGGTAGTCTACTATGCAGAGCTGAGAGGGGAGAAAGCTGCCATCAAGAAGATGAATATGAAAGCAAAGACAGAATTTCTTGCTGAACTGAAAGTCTTAACTCATGTTCATCACTTAAACCTGGTACGTTTGATTGGATATTGTGTTGAGGGTTCTCTCTTCCTTGTATATGAATACATTGACAATGGAAACTTAAAACAGAATCTACATGATTCAGAAAGAGAACCTTTGTCATGGTCTACAAGGGTGCAAATTGCTCTGGATTCAGCCAGAGGTATTGAATACATTCATGAGCATACAATGCCTGTATATATTCATCGTGACATAAAGTCAGAAAATATTTTATTAGACAAAAGCTTCCGTGCAAAGGTTGCAGATTTTGGCTTGACCAAACTTATTGAAGTTGGAAACTCCACACTTCACACTCGTCTTGTGGGAACATTTGGATACATGCCACCAGAATATGCTCAATATGGTGAATCTGTTGTTGAATCAAAGGGTCTTGTAGCTTTGTTTGAAGAAGCACTTAATCAAAGTGATCCTTTGGAAGGTCTTCGCAAACTGGTGGATCCTAGGCTTGGAGAAAACTATCCAATTGATTCTGTTCTCAAGATGGCCCAACTTGGGAGAGCTTGTACAAGAGATAACCCACTACTGCGCCCAAGTATGAGATCTATAGTTGTTGCTCTTATGACACTTTCATCACCTACTGAGGATTGTGATGATGATACTTCCTATGAAAATCAAACTCTCATAAATCTATTGTCAGTGAGATGA 1704 0.4079 MEPKSRLSVFFLSWACLSWSVESKCSRGCDLALASYYIWIGSNLTYISEIMESRVLSKPEDIVLLNPGVYRDAIQVFSRVNIPFPCDCINGEFLGHTFLYEIHPRDTYESVASTTFSNLTTDVWMQRFNIYSPDNIPDFGKVNVTINCSCGNSKVSEDYGLFITYPLRAEDTLQSIADQTKLEAELLQRYNPGVDFSQGSGLVFIPGKDQNGSYVPLHPSTGGLAGGAIAGISIGVIAGVLLLAFCVYIKYHQKKKAQLKNLTLDNSTVNSAGVSKGTTVEESREFSYKELANATNNFSMANKIGQGGFGVVYYAELRGEKAAIKKMNMKAKTEFLAELKVLTHVHHLNLVRLIGYCVEGSLFLVYEYIDNGNLKQNLHDSEREPLSWSTRVQIALDSARGIEYIHEHTMPVYIHRDIKSENILLDKSFRAKVADFGLTKLIEVGNSTLHTRLVGTFGYMPPEYAQYGESVVESKGLVALFEEALNQSDPLEGLRKLVDPRLGENYPIDSVLKMAQLGRACTRDNPLLRPSMRSIVVALMTLSSPTEDCDDDTSYENQTLINLLSVR 567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi575g00002 567 FunFam LysM receptor kinase 2 277 368 - -
Sebi575g00002 567 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 7 469 IPR044812 GO:0019199|GO:0045087
Sebi575g00002 567 ProSiteProfiles Protein kinase domain profile. 298 542 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi575g00002 567 Gene3D Transferase(Phosphotransferase) domain 1 369 551 - -
Sebi575g00002 567 Pfam Protein tyrosine and serine/threonine kinase 300 474 IPR001245 GO:0004672|GO:0006468
Sebi575g00002 567 SMART serkin_6 298 541 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi575g00002 567 Gene3D Phosphorylase Kinase; domain 1 269 368 - -
Sebi575g00002 567 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524
Sebi575g00002 567 SUPERFAMILY Protein kinase-like (PK-like) 279 539 IPR011009 -
Sebi575g00002 567 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi575g00002 Sebi-Chr575 21362 32170 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi575g00002 19 567 Receptor kinase-like Gene Family AT3G21630 52.239 0.0 605
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Sebi575g00002 PK_Tyr_Ser-Thr 1.4e-36 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi575g00002 - K13429 gmx:100776847 726.087