Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi574g00007 ATGGCAAAAGTTAAAGGAAAGACACAGCCTCCTTCCGGGAAGAATTGCCGGAGGAGCCAATCGTCGACCTTCGGTGCGGATTTTGGTTCCGGTGGTTCGATTGTGGCGGTTTCCGAGGGTGAAGGGGAAGGGGATGAGAGAGAGAAGGAAGAAGTGTGCACTATAAGAGATCTTGATAATGGGAAGGAGTTTGTGGTGAAGGAGATTAGGGAAGATGGGATGTGGGACAAGCTTAAGGAGGTAGGGACAGGGAGACAGTTGACCATGGAGGAGTTTGAGATGACGGTGGGGCACTCACCGATCGTGCAGGAGTTGATGCGGCGGCAGAATGTGGAGGAGGCGAATGTGGATTCCAATGGGAATGCAGGGATTGGTAATGGTGGTGTTAGTGGAAATGGATCAAAGGTGAAGAAGAAAGGTGGAGGTGGGGGTTGGTTGAAGAGTATAAGGAGTGTTGCTAGCTCCATGGCGGGTCATAAGGAACGCCGGAGCAGCGATGAGAGGGATACTTCGTCGGAGAAAGGAGGGAGGCGGTCGAGTTCTGCCACTGATGATAGCCAGGATGCTACATTTCATGGACCTGAGAGGGTGAGGGTTAGGCAGTATGGGAAGTCATGTAAAGAGCTTACTGCATTGTACAAGAGCCAGGAGATTCAGGCTCATAATGGATCTATTTGGAGTATTAAGTTTAGTTTGGATGGGAAGTATCTTGCTAGTGCTGGTGAGGATTGTGTGATTCATGTTTGGCAGGTTGTGGAATCTGAGAGGAAAGGGGAGTTGCTGTTGATGGAGAAACCAGAGGATGGGAATGTGAATAATATGTTGTTTCTTGTCAATGGATCGCCAGAACCCACATTGTTTTCTCCCTTGTTGGACAACCATCCAGAGAGGAAGAGAAAGGGGAGGTCATCCATTAGCAGAAAGTCGTTGAGCTTGGACCAGTTTGTGGTTCCAGAGACTGTGTTTGCACTTACTGAAAAACCCATTTGCTCCTTTCAAGGCCATCATGATGATGTGCTTGATCTGTCATGGTCCAAGTCTCAGCATTTGCTCTCATCTTCAATGGACAAAACAGTGCGGCTGTGGCATTTGTCTAGCAAGTCTTGCCTGAAAATCTTTTCACACAGTGACTATGTAACTTGCATCCAGTTTAATCCTGTTGATGATAGATACTTCATTAGTGGATCTTTGGATGCTAAGGTTCGCATATGGAGCATTCCTGATCGACAAGTTGTTGACTGGACTGATCTGCATGAGATGGTCACTGCTGCTTGTTATACACCTGATGGTCAGGGTGCACTTGTTGGTTCATACAAGGGTAGCTGCCATTTATATAATACATCCGAAAATAAATTGCAACAGAAAAGTCAGATCAATCTGCAGAACAAGAAAAAGAAATCGCATCACAAGAAAATTACTGGTTTCCAGTTTGCCCCAGGAAGTACATCAGAAGTACTTATCACATCCGCTGATTCACGAATAAGGGTTGTTGATGGTGTTGATCTGGTTCATAAGTTTAAAGGCTTTCGAAATGCAACTAGCCAGATTTCAGCCTCCCTTACGGCAAATGGTAAACATATTGTTGCAGCAAGCGAGGATTCCCATGTATATATCTGGAAAAATGAAGCTGATTGCAGGCCTAACAGAAGTAAAGGTGTCACTGTCACGAGCTCATATGAACATTTTCACTGTAAAGATGTGTCAGTGGCTATTCCCTGGCCTGGCATGGGTGATGCATGGGACATGCATGATACATTTTCTGGAGAACAACCTGAGCTTGAAAACAATGCTGATGAAGTTGCATCAGCCAATCATCCTCCTACTCCTGTAGAGGAAAACTTTGGTTCTGAGGGTTCACGATCTGCTTCAGGTTACAACAATAGTCCATGCCATGCAACCATTGCAAGTGCAACAAACAGTTACTTTTTTGATAGAATTTCTGCAACATGGCCAGAGGAAAAACTACTTCTTGCTACAAGAAATCAAAGCCCTCGTGTCAGTCTGGATTTCTCTAATGGGAATCGGAGTGTTAAGTTCATTGATACAACCGCTAAACTCATTACGGTTAATGACTGTTAA 2079 0.4521 MAKVKGKTQPPSGKNCRRSQSSTFGADFGSGGSIVAVSEGEGEGDEREKEEVCTIRDLDNGKEFVVKEIREDGMWDKLKEVGTGRQLTMEEFEMTVGHSPIVQELMRRQNVEEANVDSNGNAGIGNGGVSGNGSKVKKKGGGGGWLKSIRSVASSMAGHKERRSSDERDTSSEKGGRRSSSATDDSQDATFHGPERVRVRQYGKSCKELTALYKSQEIQAHNGSIWSIKFSLDGKYLASAGEDCVIHVWQVVESERKGELLLMEKPEDGNVNNMLFLVNGSPEPTLFSPLLDNHPERKRKGRSSISRKSLSLDQFVVPETVFALTEKPICSFQGHHDDVLDLSWSKSQHLLSSSMDKTVRLWHLSSKSCLKIFSHSDYVTCIQFNPVDDRYFISGSLDAKVRIWSIPDRQVVDWTDLHEMVTAACYTPDGQGALVGSYKGSCHLYNTSENKLQQKSQINLQNKKKKSHHKKITGFQFAPGSTSEVLITSADSRIRVVDGVDLVHKFKGFRNATSQISASLTANGKHIVAASEDSHVYIWKNEADCRPNRSKGVTVTSSYEHFHCKDVSVAIPWPGMGDAWDMHDTFSGEQPELENNADEVASANHPPTPVEENFGSEGSRSASGYNNSPCHATIASATNSYFFDRISATWPEEKLLLATRNQSPRVSLDFSNGNRSVKFIDTTAKLITVNDC 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi574g00007 692 MobiDBLite consensus disorder prediction 114 197 - -
Sebi574g00007 692 Pfam WD domain, G-beta repeat 217 249 IPR001680 GO:0005515
Sebi574g00007 692 Pfam WD domain, G-beta repeat 327 362 IPR001680 GO:0005515
Sebi574g00007 692 Pfam WD domain, G-beta repeat 368 405 IPR001680 GO:0005515
Sebi574g00007 692 MobiDBLite consensus disorder prediction 114 128 - -
Sebi574g00007 692 MobiDBLite consensus disorder prediction 156 181 - -
Sebi574g00007 692 PRINTS G protein beta WD-40 repeat signature 392 406 IPR020472 -
Sebi574g00007 692 PRINTS G protein beta WD-40 repeat signature 237 251 IPR020472 -
Sebi574g00007 692 PRINTS G protein beta WD-40 repeat signature 350 364 IPR020472 -
Sebi574g00007 692 FunFam WD repeat-containing protein 44 313 579 - -
Sebi574g00007 692 MobiDBLite consensus disorder prediction 585 622 - -
Sebi574g00007 692 FunFam Transducin/WD40 repeat-like superfamily protein 176 281 - -
Sebi574g00007 692 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 332 366 - -
Sebi574g00007 692 Gene3D - 309 565 IPR015943 GO:0005515
Sebi574g00007 692 MobiDBLite consensus disorder prediction 1 51 - -
Sebi574g00007 692 SMART WD40_4 499 540 IPR001680 GO:0005515
Sebi574g00007 692 SMART WD40_4 408 446 IPR001680 GO:0005515
Sebi574g00007 692 SMART WD40_4 325 363 IPR001680 GO:0005515
Sebi574g00007 692 SMART WD40_4 211 250 IPR001680 GO:0005515
Sebi574g00007 692 SMART WD40_4 366 405 IPR001680 GO:0005515
Sebi574g00007 692 SMART WD40_4 453 498 IPR001680 GO:0005515
Sebi574g00007 692 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 218 251 - -
Sebi574g00007 692 SUPERFAMILY WD40 repeat-like 213 541 IPR036322 GO:0005515
Sebi574g00007 692 ProSiteProfiles Trp-Asp (WD) repeats profile. 372 406 IPR001680 GO:0005515
Sebi574g00007 692 PANTHER WD REPEAT DOMAIN 44 36 672 IPR040324 -
Sebi574g00007 692 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 372 406 - -
Sebi574g00007 692 ProSiteProfiles Trp-Asp (WD) repeats profile. 332 372 IPR001680 GO:0005515
Sebi574g00007 692 MobiDBLite consensus disorder prediction 12 28 - -
Sebi574g00007 692 ProSiteProfiles Trp-Asp (WD) repeats profile. 218 259 IPR001680 GO:0005515
Sebi574g00007 692 Gene3D - 174 276 IPR015943 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi574g00007 Sebi-Chr574 192662 201012 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi574g00007 319 511 U-box Gene Family AT1G04510 27.014 7.15e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi574g00007 K20241 - gmx:100815065 1015.37