Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi573g00026 ATGGCACCCAGGAATGATGGACCAACTAAGAAACCAATGAATAGAGGAGCATGGACCCCAGAGGAAGATCAAAAGCTAGCCAAATGCATTGAAATTCATGGGCCAAAGAGGTGGAAGACTGTTGCTGTCAAATCAGGTTTAAATAGGTGTGGAAAGAGTTGCAGGCTGAGATGGTTAAACTATCTGAGACCCAATATCAAGAGGGGAAACATATCAGATGAAGAAGAGGATTTGATTCTTAGACTTCACAAACTTTTGGGAAACAGGTGGTCTTTGATAGCTGGGAGGCTTCCAGGGCGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGTCAATCACAAAGAGGTAAAACCAGAAACTTCCATGGCACAAGAAACTACAACCCACAACCAGATTGCTGGAGACAGTGCCATGTTAGAAAGTAAAGAGACCATTAATGGAAGTGGTAACTCAGATGTTAGTTTTGATGTGAACGAATTCTTCAATTTTGCCAGTGAAGGACCCTATGGGTTTGATTGGGTGAACAAGTACTTAGAATTTGATCAGATTCCTGACAGCACAAATTTGTTCTGA 591 0.4078 MAPRNDGPTKKPMNRGAWTPEEDQKLAKCIEIHGPKRWKTVAVKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLILRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKVNHKEVKPETSMAQETTTHNQIAGDSAMLESKETINGSGNSDVSFDVNEFFNFASEGPYGFDWVNKYLEFDQIPDSTNLF 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi573g00026 196 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Sebi573g00026 196 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Sebi573g00026 196 Gene3D - 71 140 - -
Sebi573g00026 196 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 10 137 - -
Sebi573g00026 196 CDD SANT 72 113 IPR001005 -
Sebi573g00026 196 SMART sant 67 115 IPR001005 -
Sebi573g00026 196 SMART sant 14 64 IPR001005 -
Sebi573g00026 196 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Sebi573g00026 196 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Sebi573g00026 196 FunFam transcription repressor MYB5-like 72 138 - -
Sebi573g00026 196 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Sebi573g00026 196 FunFam MYB-related transcription factor 14 67 - -
Sebi573g00026 196 Gene3D - 9 68 - -
Sebi573g00026 196 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Sebi573g00026 196 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Sebi573g00026 196 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi573g00026 Sebi-Chr573 610052 610874 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi573g00026 9 186 MYB Transcription Factor Family AT3G13540 46.842 1.21e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Sebi573g00026 Myb_DNA-binding 7.8e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi573g00026 K09422 - gmx:100799575 311.612