Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi572g00032 ATGGATCCGGACGCGTTCACCGCCAGCCTATTCAAGTGGGACCCGCGCACCGTCCTTCCACCTCCCGCGGCCACACGTCCCCCTCTCCTCGACTACGCGGTTGCTCCGCCAGTGGCCGCGACGGCGGCGTATCATCCGGCGAGAGCGCCGAGGGAGTTGGAGGAACTGTTCCAAGCTTACGGCATCAGATACTACACGGCGGCGAAGATATCGGAGCTTGGTTTCACGGCGAGCACGCTGGTGGACATGAAGGACGAGGAGTTAGACGAAATGATGAACAGCCTCTCCCAGATTTTCCGATGGGATCTCCTTGTCGGCGAGCGTTACGGCATCAAAGCCGCCGTCAGAGCCGAACGAAGACGCGTCGACGACGAGGACATGAAGCGCCGCAACCTCCTCTCCACCGACACAACCACCAACGCACTCGATGCTCTCTCTCAAGAAGTTGCGGCGGAGGAGAGGAGGAAGCAGCAGCAGATGAGGAGGAGGAGGGCAAGGATGAAGAGGAATGCTGAGGAGAATGAAGAAGTGGAAGAGGAGGAAGGAGAAGAGAATGATGAAGGAAACAACAACAGTGGTGGTGGTGGTTGTGAGAGGCAAAGAGAGCATCCATTCATAGTGACTGAGCCTGGGGAGGTTGCACGTGGCAAGAAGAATGGTCTTGACTATCTCTTTCATCTCTACGAGCAATGCCGTGAGTTCTTGATCCAGGTTCAGGCCATCGCCAAGGACCGCGGTGAAAAATGCCCAACCAAGGTGACAAATCAGGTATTTAGGTACGCGAAGAAAGCTGGAGCTAGCTACATCAACAAGCCGAAAATGCGACACTACGTGCATTGCTACGCGTTGCATTGTCTTGACGAGGAGGTGTCGAATGAGCTGAGAAGGGGTTTCAAGGAGAGAGGGGAGAATGTAGGAGCATGGAGGCAAGCTTGTTACAAGCCCCTTGTGGCCATAGCAGCACGTCAAGGTTGGGACATTGATGCCATTTTCAATGCGCATCCTCGTCTTTCCATATGGTATGTGCCAACAAAGCTCCGTCAACTTTGTCATGCCGAGAGGAACAGCGCCGCCGCTTCTAGCTCCGTCTCTGTTGGCAGCGGCCACCTTCCCTTCTAA 1119 0.5532 MDPDAFTASLFKWDPRTVLPPPAATRPPLLDYAVAPPVAATAAYHPARAPRELEELFQAYGIRYYTAAKISELGFTASTLVDMKDEELDEMMNSLSQIFRWDLLVGERYGIKAAVRAERRRVDDEDMKRRNLLSTDTTTNALDALSQEVAAEERRKQQQMRRRRARMKRNAEENEEVEEEEGEENDEGNNNSGGGGCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLIQVQAIAKDRGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFNAHPRLSIWYVPTKLRQLCHAERNSAAASSSVSVGSGHLPF 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi572g00032 372 Coils Coil 142 187 - -
Sebi572g00032 372 PANTHER PROTEIN LEAFY 1 371 IPR002910 GO:0003677|GO:0006355
Sebi572g00032 372 Pfam Floricaula / Leafy protein SAM domain 50 126 IPR035079 -
Sebi572g00032 372 MobiDBLite consensus disorder prediction 149 200 - -
Sebi572g00032 372 Gene3D Protein LEAFY 195 364 IPR038276 -
Sebi572g00032 372 Pfam DNA Binding Domain (C-terminal) Leafy/Floricaula 192 358 IPR035209 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi572g00032 Sebi-Chr572 647025 649092 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi572g00032 1 367 Orphan Transcription Factor Family AT5G61850 62.408 6.53e-158 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LFY Sebi572g00032 C_LFY_FLO 2.2e-109 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi572g00032 - - gmx:100799720 556.599