Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sebi572g00007 ATGTCGAAATCCAACACTGCCACCACCACGCTACCACCGAAACCCACATGGGTCCTCCCATATCGAACGGAGAACCTGAGGGAAGTGTACACTTTGGGGAGAAAACTGGGTCAGGGTCAATTTGGCACCACATACCTTTGCAGACACAACTCCACGGGTCGCACCTATGCTTGCAAGTCAATCCCAAAGCGGAAGCTGTTATGCAAAGAGGACTACGATGATGTGTGGAGGGAGATTCAGATAATGCACCATTTGTCTGAGCAACCCAATGTTGTGAGGATCCATGGCACCTATGAGGACTCTTCCTCTGTTCACTTGGTCATGGAGCTTTGTGAAGGTGGTGAGTTGTTCGATAGGATCGTGAAGAAAGGGCATTACAGTGAGAGACAAGCTGCTAAGTTGATTAAGACTATTGTTGAGGTTGTGGAGGCTTGTCATTCTCTTGGGGTTATGCATAGAGACCTCAAACCTGAGAACTTCTTGTTTGACACTGTTGAAGAGGATGCTAAACTCAAAACCACTGATTTTGGATTGTCTGTTTTTTACAAGCCAGGCGAAACCTTTAGCGATGTTGTTGGAAGCCCATACTATGTTGCACCAGAGGTCTTGCGCAAGCATTATGGACCTGAATTAGACGTGTGGAGTGCTGGGGTTATTTTGTACATCTTACTAAGCGGGGTGCCGCCATTTTGGGCTGAAACGGAGCAAGGGATCTTCCGACAGATTTTGCTGGGAAGACTTGATTTCCAGTCTGAGCCATGGCCTAGCATTTCAGACAGTGCCAAGGATCTAATTCGAAAAATGCTTGATCGGAATCCAAAAACAAGGCTTACAGCTCATCAAGTACTCTGCCACCCATGGATCGTTGATGACAACATTGCACCAGATAAACCTCTTGATTCTGCTGTTTTATCACGCCTGAAGCAGTTCTCTGCAATGAATAAACTTAAAAAGATGGCTTTGCGTGTTATTGCGGAGAGGCTTTCTGAGGAAGAAATTGGTGGTCTGAAGGAGTTATTCAAAATGATTGATGCTGATAACAGTGGAACTATAACATTTGATGAGCTAAAAGAAGCTTGTAAGGAGTTTGGTTTGGATGATGTCCATATTGATGAAATGGTCAAGGAAATTGATCAAGACAATGATGGACAGATAGATTATGGGGAATTTGCAGCCATGATGAGAAAGGGCAATGGAGGGATCGGAAGGAGAACCATGAGAAGCACACTCAATTTCAGAGATGCTCTGGGAATTATAGACAATGGGTCCAATTAA 1275 0.4471 MSKSNTATTTLPPKPTWVLPYRTENLREVYTLGRKLGQGQFGTTYLCRHNSTGRTYACKSIPKRKLLCKEDYDDVWREIQIMHHLSEQPNVVRIHGTYEDSSSVHLVMELCEGGELFDRIVKKGHYSERQAAKLIKTIVEVVEACHSLGVMHRDLKPENFLFDTVEEDAKLKTTDFGLSVFYKPGETFSDVVGSPYYVAPEVLRKHYGPELDVWSAGVILYILLSGVPPFWAETEQGIFRQILLGRLDFQSEPWPSISDSAKDLIRKMLDRNPKTRLTAHQVLCHPWIVDDNIAPDKPLDSAVLSRLKQFSAMNKLKKMALRVIAERLSEEEIGGLKELFKMIDADNSGTITFDELKEACKEFGLDDVHIDEMVKEIDQDNDGQIDYGEFAAMMRKGNGGIGRRTMRSTLNFRDALGIIDNGSN 424
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sebi572g00007 424 SMART efh_1 369 397 IPR002048 GO:0005509
Sebi572g00007 424 SMART efh_1 335 363 IPR002048 GO:0005509
Sebi572g00007 424 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 382 - -
Sebi572g00007 424 FunFam Calcium-dependent protein kinase SK5 198 293 - -
Sebi572g00007 424 CDD STKc_CAMK 29 287 - -
Sebi572g00007 424 Pfam EF-hand domain pair 336 395 IPR002048 GO:0005509
Sebi572g00007 424 Gene3D Transferase(Phosphotransferase) domain 1 117 331 - -
Sebi572g00007 424 FunFam Calcium-dependent protein kinase 1 32 115 - -
Sebi572g00007 424 Pfam Protein kinase domain 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi572g00007 424 FunFam CDPK-related kinase 3 22 190 - -
Sebi572g00007 424 SUPERFAMILY EF-hand 326 398 IPR011992 -
Sebi572g00007 424 CDD EFh 336 395 IPR002048 GO:0005509
Sebi572g00007 424 ProSitePatterns EF-hand calcium-binding domain. 344 356 IPR018247 -
Sebi572g00007 424 SMART serkin_6 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi572g00007 424 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672|GO:0006468
Sebi572g00007 424 SUPERFAMILY Protein kinase-like (PK-like) 10 311 IPR011009 -
Sebi572g00007 424 ProSitePatterns Protein kinases ATP-binding region signature. 36 59 IPR017441 GO:0005524
Sebi572g00007 424 ProSiteProfiles Protein kinase domain profile. 30 288 IPR000719 GO:0004672|GO:0005524|GO:0006468
Sebi572g00007 424 Gene3D Phosphorylase Kinase; domain 1 32 116 - -
Sebi572g00007 424 FunFam Calmodulin-2 A 325 424 - -
Sebi572g00007 424 ProSiteProfiles EF-hand calcium-binding domain profile. 369 400 IPR002048 GO:0005509
Sebi572g00007 424 ProSiteProfiles EF-hand calcium-binding domain profile. 331 366 IPR002048 GO:0005509
Sebi572g00007 424 ProSitePatterns EF-hand calcium-binding domain. 378 390 IPR018247 -
Sebi572g00007 424 Gene3D - 332 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sebi572g00007 Sebi-Chr572 104328 109247 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Sebi572g00007 12 392 EF-hand Containing Proteins AT1G35670 76.302 0.0 612
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Sebi572g00007 Pkinase 2.2e-78 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sebi572g00007 K13412 - gmx:100790443 717.227